DN135078

Overview
NameDN135078
Unique NameDN135078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:902..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 33/90 (36.67%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  152 IAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 415
            + ++KL++VDF A WC PC+++SP++ ELA++ +  V  +K++ DE  S++ E+ + ++PT +L K+GK ++ ++GA  K  L  A++K+
Sbjct:   17 VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            A  K++V+D    WC PCK+++P   EL++K   ++FLK+D + + K +A+E  +  +PTF + K+ KV++ + GAK ++L  A+E
Sbjct:   95 AGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  119 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            ++S  E  +K   A   +VVDF A+WC PCK ++P L +L++    + F KVDVDEL  VA    V AMPTF   K G+  E + GA    +Q  V+
Sbjct:    6 IKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVK 102          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            A +K++V+D    WC PCK+++P    L++K   V+FLK+D + E + +A+E  +  +PTF + K+ +V++ + GAK D+L  A+E
Sbjct:   88 AGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIE 173          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 31/88 (35.23%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  137 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVG-AKKDELQ 397
            +L + ++  K +VVDF A+WC PCK++ PI  E+A+      F+KVDVD+   ++ E+ + ++PT +  ++GK+ ++ +G   K+EL+
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELK 96          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 37/116 (31.90%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   86 AEEGQ----VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 421
            AE G+    V+   + + + E L+  +  K L+VV F A W P C  M+ +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H +
Sbjct:    6 AEAGEAAVAVVEVGSAQQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVS 119          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  101 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL--PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 397
            VI   + + W   + K       + VD  A WC PCK +SP+ S+LA K   P  +F KV+VDE + +A    V+AMPTFV  + GK ++ + GA    L+
Sbjct:    3 VIEIRSYQHWISTIPKS----GYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALK 99          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 32/90 (35.56%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  152 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 421
            + AK L+VV F A W P C  M+ +++ELAK+   V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++HA+
Sbjct:   27 LRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 116          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  116 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 415
            T  ++++ +Q G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   +EKH
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 37/102 (36.27%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  116 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 415
            T +S++ +  +G+     ++ DF A WC PCK+++P+L EL +++   +  +K+DVDE +  A ++ V ++PT ++ K+G+V+E  VG K K+ LQ  V KH
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
The following BLAST results are available for this feature:
BLAST of DN135078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_CYACA8.814e-1336.67Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
TRXF2_ARATH1.504e-1237.21Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
THIO_PENCH1.504e-1241.24Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRXF_BRANA1.964e-1237.21Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_MYCGA1.964e-1235.23Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
GLRX3_MOUSE1.964e-1231.90Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
TXL1_SCHPO2.565e-1237.62Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
GLRX3_BOVIN2.565e-1235.56Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
THIO_STAS14.375e-1236.27Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_BACSU4.375e-1236.27Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca05h03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135078 ID=DN135078; Name=DN135078; organism=Citrus sinensis; type=EST; length=602bp
CGGGCCGGGGGGTCACCAAACACAGAAACAANNNTNNNNAAATCAGAACA
GAGAAGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAA
GTGATCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGG
CATTGCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCC
CGCCATGCAAGCTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTG
CCCGCTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGC
TGAGGAATGGGCTGTAGAAGCCATGCCGACCTTTGTACTGACGAAAGAAG
GCAAAGTCCTGGAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTG
GCTGTCGAAAAGCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTG
ATTGATGCGTACATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTT
GTGGTTGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATAT
ATGAATAAATGACAATCTTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
back to top