DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   97 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+  KP
Sbjct:  107 ETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  104 EHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  105 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK  YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK  YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS6_FLAPR1.468e-2664.86Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_RAPSA1.917e-2664.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.917e-2664.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1A_ARATH1.917e-2663.51Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS2A_SOLLC2.504e-2664.86Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_CAPAN3.270e-2664.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU3.270e-2666.22Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_BRANA3.270e-2663.51Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA3.270e-2663.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TOBAC4.270e-2664.86Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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