DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+VHR+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  106 EEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 179          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D+SQ+L E+QE K AYPNA+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN+  PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+  KP
Sbjct:  105 ERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG++ RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+  KP
Sbjct:   92 KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN + PGYYDGRYWTMWKLP+FGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 3
Query:   24 EVG--YVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            EVG  +V+REN+K PGYYDGRYWTMWKLPMFGC D+SQ+  E+ ECK AYP+A++R + F+N++Q QC+SF+  KP
Sbjct:  101 EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct:  107 GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_GOSHI7.284e-2663.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA7.284e-2664.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH9.514e-2662.16Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS2B_ARATH9.514e-2662.16Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_SOLLC9.514e-2663.51Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1B_ARATH9.514e-2662.16Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_HORVU1.623e-2560.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO1.623e-2563.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SILPR2.119e-2563.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG2.119e-2562.50Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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