DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG+V RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+  +P
Sbjct:   93 KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct:  107 GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YP A+IR + F+N +Q QC+ F+  +P
Sbjct:  102 EHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN + PG+YDGRYWTMWKLPMFGC DSSQ++ EI+E KK YP+A+IR + F+N +Q QC+SF+  KP
Sbjct:  108 GFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 44/74 (59.46%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG++ RE++  PGYYDGRYWTMWKLPMFGC D++Q++NE++E KK YP+AY+R + F+N +Q QC+SF+  KP
Sbjct:   31 KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 104          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG+V RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+  +P
Sbjct:   92 KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q+  E++ECKK YP+A+IR + F+N +Q QC+SF+  KP
Sbjct:  106 GFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 44/72 (61.11%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF++++P
Sbjct:  107 GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG+V+RE    PGYYDGRYWTMWKLPMFGC DSSQ+L E+ EC KAYP+ + R + F+N +Q QC+SFL  KP
Sbjct:  102 KVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:   93 KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS2_WHEAT2.119e-2560.81Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS2_FRIAG2.119e-2562.50Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HELAN2.768e-2560.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA2.768e-2563.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT2.768e-2559.46Ribulose bisphosphate carboxylase small chain clon... [more]
RBS1_WHEAT3.615e-2560.81Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_MUSAC4.722e-2562.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG4.722e-2561.11Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS_ZANAE6.167e-2563.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ6.167e-2560.81Ribulose bisphosphate carboxylase small chain A, c... [more]

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Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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