DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:   93 KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:   93 KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 44/72 (61.11%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN+  PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  101 GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.054e-25
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE++  PGYYDGRYWTMWKLPMFGC D++Q+  E+QE KKAYP+A+IR + F+N +Q QC+SF+  KP
Sbjct:  104 EHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.054e-25
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE+++ P YYDGRYWTMWKLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+  KP
Sbjct:  102 EHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  105 GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  105 GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  105 GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  105 GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+  KP
Sbjct:  105 GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS1_ORYSJ6.167e-2560.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI6.167e-2560.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_LEMGI6.167e-2561.11Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_STELP8.054e-2562.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN8.054e-2562.16Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_LEMGI1.052e-2461.11Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.052e-2461.11Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI1.052e-2461.11Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_LEMGI1.052e-2461.11Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS2_LEMGI1.052e-2461.11Ribulose bisphosphate carboxylase small chain SSU2... [more]

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Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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