DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+REN + PGYYDGRYWTMW+LP+FG  DSSQ+L E+ +CK  YP+++IR + F+N +Q QC+SF+   P
Sbjct:  104 EKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            G+V+RE+ K PGYYDGRYWTMWKLPMFG  D +Q++NE++E KKA P+A++R + FN++++ QC+SF+  KP
Sbjct:   49 GFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKP 120          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.679e-22
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE++K PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E   AYP A++R + F+N +Q QC+SF+   P
Sbjct:  104 EKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.679e-22
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+V+RE++K PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E   AYP A++R + F+N +Q QC+SF+   P
Sbjct:  104 EKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G+VHR+ +  PGYYDGRYWTMW+LP+FG  D++Q+L E+ ECK  YP A+IR + F+N +Q QC+SF+   P
Sbjct:  102 EKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G V+RE++++PGYYDGRYWTMWKLPMFGC D++Q+L E+ E  K +P+ Y R + F+N +Q QC+SFL  KP
Sbjct:  106 EHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKP 179          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            E G V+RE  + PGYYDGRYWTMWKLPMFGC D+ Q+L E+ E  KAYP+ Y R + F+N +Q QC+SFL  KP
Sbjct:  106 EHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKP 179          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.857e-21
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D SQ+L E+  C+ A+PN YIR +AF+N KQ QCM FL+Q+P
Sbjct:   94 GYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   24 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            +VG++ RE++  PGYYDGRYWTMWKLPMFGC   +Q++ E++E +K YP+ Y R + F+N +Q Q +SF+  KP
Sbjct:   93 KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKP 166          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct:  200 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 260          

HSP 2 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct:  344 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 404          

HSP 3 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct:  631 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 691          

HSP 4 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct:  774 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 834          

HSP 5 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct: 1062 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1122          

HSP 6 Score: 98.2117 bits (243), Expect = 2.053e-20
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct: 1206 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266          

HSP 7 Score: 96.2857 bits (238), Expect = 7.801e-20
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD  YWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R  AF++ KQ Q +SF++Q+P
Sbjct:  487 GYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 547          

HSP 8 Score: 95.9005 bits (237), Expect = 1.019e-19
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 3
Query:   63 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP  Y+R LAF++ KQ Q +SF++Q+P
Sbjct:  919 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRP 978          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_MEDSA4.419e-2356.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL7.538e-2358.33Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS3_PEA1.679e-2258.11Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA1.679e-2258.11Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS_TRIRP2.193e-2255.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES2.193e-2258.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR4.886e-2260.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CHLMO1.857e-2167.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA1.203e-2052.70Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_EUGGR2.053e-2063.93Ribulose bisphosphate carboxylase small chains, ch... [more]

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Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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