DN135049

Overview
NameDN135049
Unique NameDN135049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.133e-12
Identity = 26/48 (54.17%), Postives = 40/48 (83.33%), Query Frame = 2
Query:  173 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 316
            +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  158 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 310
            S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.190e-11
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 2
Query:  179 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 316
            I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I K
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 66          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  146 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 310
            MA      C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  167 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 316
            TC DI   +LA+ILPPLGVFL+ GC A+  I +LLTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: Y567_PSEAE (UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa GN=PA0567 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 2
Query:  173 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 319
            + IL+A++LPPLGVFL+ G    FW+ +LLT+LGYIPGI++AVY I K+
Sbjct:    4 IRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR 52          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  167 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 310
            TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of DN135049 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  167 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 310
            TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
The following BLAST results are available for this feature:
BLAST of DN135049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RC21_ARATH3.133e-1254.17UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
RC22_ARATH9.114e-1259.62UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
PMP3_GIBZE1.190e-1169.57Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC23_ARATH1.555e-1164.29UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
PMP3_CRYNE2.030e-1166.04Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
Y567_PSEAE2.652e-1159.18UPF0057 membrane protein PA0567 OS=Pseudomonas aer... [more]
YCU3_CAEEL3.463e-1164.71UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
YCU4_CAEEL4.523e-1164.71UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca05d10 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05d10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135049 ID=DN135049; Name=DN135049; organism=Citrus sinensis; type=EST; length=466bp
CGGGCCGGGGGATAAACAAAAATACCAAGTNNNNANNNNAAAAGCAGTTA
CTCAAAACCTTAAACACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTA
AATTTTATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGC
AGATGGAAGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGC
CTCCTCTTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATC
TGTTTGCTCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGT
TTATGCCATCACCAAGAAGTGATCTCTCTTCTTCATCTATTGAGAGATCC
CAAGGGCATCATGTGTTTATGAGATCTTTTATTTACAACCGTTTGATGGA
CAGCTCTGATTTGATGTAGCCAGATGGGTTCTGATTCTTAATCAACTGGG
GTGTGCGTGTGTNNNG
back to top