DN134953

Overview
NameDN134953
Unique NameDN134953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  146 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 400
            +LVVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA    ++Q IA ++
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 43/97 (44.33%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  113 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 400
            N QL K++   +LVV+DF A+WCGPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  134 NETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 397
            N   +LVVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  GA ++ L+Q I  H
Sbjct:   17 NAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  125 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 400
            Q +  + +LVV+DF A+WCGPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.735e-16
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  104 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 394
            E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ GA KE+L+  IA+
Sbjct:  457 EDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  116 EQLQKSNETK------QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 400
            +Q+  S+E K      +LVVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  146 QLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 397
            +LVV+DF A WCGPC+ IAP L ELA +  + V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L + + KH
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  116 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 403
            ++  K   + +++++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L+  + K LA
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  113 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 415
            N  L++S +  +L+++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ + + I +H +   A
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  149 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 397
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
The following BLAST results are available for this feature:
BLAST of DN134953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRX2_YEAST3.472e-1647.06Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO2_DROYA3.472e-1644.33Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO_ICTPU4.535e-1646.67Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO2_DROME4.535e-1643.01Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TXND2_HUMAN7.735e-1643.30Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRX1_SCHPO2.251e-1539.60Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIOT_DROME2.251e-1544.71Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO_COPCM2.939e-1535.71Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
NGLY1_CAEEL2.939e-1536.63Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_CHLTR5.014e-1545.24Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionwca03h02 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134953 ID=DN134953; Name=DN134953; organism=Citrus sinensis; type=EST; length=656bp
CGGCCGGGGNNNNANNNCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCCACC
GTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCT
GGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTG
CTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTG
AAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGA
GGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGG
TGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTG
GCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTT
TAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTA
GAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTT
ACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATA
TTTGTTGTTGAACCTAATTTTGACGTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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