DN134944

Overview
NameDN134944
Unique NameDN134944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  189 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 425
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  186 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 449
            +VV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   89 LVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  186 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 452
            +VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   92 IVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  138 EAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 437
            EA ++  Q        V +VDF A+WCGPC  + P + ELA       +  K++VDE  + A  + + ++PT + +K GK+VD++VGA  + +   IAK L
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNM---IAKKL 104          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  132 TVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 398
            TV+  N   Q         VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  147 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 437
            NE+L K  + ++  VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D++ +      + ++PTF F   G  V +  GA +  L+ T+  ++
Sbjct:   10 NEELDKYLQHQR--VVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
The following BLAST results are available for this feature:
BLAST of DN134944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXF_SPIOL1.897e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF1_ARATH1.897e-1138.20Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TRXF_BRANA2.478e-1136.67Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO2_CHLTE3.236e-1135.64Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO1_CORNE3.236e-1138.89Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO3_DICDI7.209e-1135.05Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]

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Properties
Property NameValue
Genbank descriptionwca03f11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134944 ID=DN134944; Name=DN134944; organism=Citrus sinensis; type=EST; length=646bp
CCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTAT
CGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGC
AGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACG
AGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTT
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