DN134944

Overview
NameDN134944
Unique NameDN134944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  141 AWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 440
            +W E + +S    ++ V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   83 SWKEFVLES----EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  186 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 425
            +VV+D    WCGPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V GAK E+L   I
Sbjct:   99 IVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  147 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELQQTIAKHLATA 446
            N++LQK   +   VVV DF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:    8 NDELQKLLSSTTYVVV-DFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   78 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLV-VVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 437
            PR++ +  AE G V         N+   K+   +  V V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  189 VVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 380
            VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   24 VVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  180 QLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 437
            +L V+VDF A WCGPCR +AP + E++++    V  +K++ DE  + A+ + + ++PT M  K G+ VD VVGA  K  L  T+ K+L
Sbjct:   20 ELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 32/88 (36.36%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  183 LVVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 440
            L V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   20 LPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  138 EAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 437
            EA ++  Q         V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA  K  + + I +H+
Sbjct:    6 EATDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 31/88 (35.23%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  183 LVVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 440
            L V+VDF A WCGPCR ++P +  +A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   20 LPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  189 VVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 437
            V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   22 VLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
The following BLAST results are available for this feature:
BLAST of DN134944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXM_SPIOL2.241e-1236.27Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXF2_ARATH2.241e-1241.98Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
THIO_FUSCU2.241e-1240.87Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
TRXM_CHLRE2.927e-1235.77Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIO_NEUCR2.927e-1253.73Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO_SYNY38.516e-1240.91Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORYE8.516e-1236.36Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_CHLLT1.112e-1134.31Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_PORPU1.453e-1135.23Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_GRIPA1.453e-1144.71Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionwca03f11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134944 ID=DN134944; Name=DN134944; organism=Citrus sinensis; type=EST; length=646bp
CCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTAT
CGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGC
AGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACG
AGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTT
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