DN134943

Overview
NameDN134943
Unique NameDN134943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN134943 vs. ExPASy Swiss-Prot
Match: YFH9_SCHPO (Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces pombe GN=SPAC23A1.09 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:  334 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTGPFKRKNMRPGRTXRSRS 660
            P +S+EG+II+VTGVH EA E+ ++++F ++G ++NLHLNLDRRTG+VKGYALIEY   E+AQ A+   N   LL + L VD+AF   P   P      RP  + RSRS
Sbjct:    3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKN-LSLLDEKLEVDFAFLEPPERAP------RPSISTRSRS 104
The following BLAST results are available for this feature:
BLAST of DN134943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YFH9_SCHPO1.336e-2351.38Uncharacterized RNA-binding protein C23A1.09 OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionwca03f10 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134943 ID=DN134943; Name=DN134943; organism=Citrus sinensis; type=EST; length=663bp
GGCCGGGGGTCTTCTCAGAATAAAAATTAAAACGCAAGACGCAGGCAAAT
CTCAAATCCCTAAAAGTTCGAAAAAAACACAACAAAAATGGCGAACGCAG
AAGTGGACGCGCTCGACTTCGAGGACGACGACTTGATGGACGAGGACGGG
ACTGCCGACGTCGATGCATCCTCTTCCCCGCGGGCCCCGCAGCCCAAGCT
TAAGTCCGCCATCACTGGTGGCGCACCTAAGAAGACCAAAGGACGCGGTT
TTCGTGAAGAAGCCGACTCCGAGCGACATAGCCGGCTCGCTGATCGTAAT
TTTGAGTCTCTTGGCACCGATGGGGGACCGGGTCCCCAACGATCTATTGA
GGGATGGATAATTTTGGTTACTGGTGTGCATGAAGAGGCACAAGAAGATG
ATTTACAAAATGTATTTGGTGAATATGGGGAGATCAGAAACTTGCATTTG
AATCTTGATCGTCGTACAGGTTTTGTGAAGGGGTATGCGCTGATTGAATA
TGAGAATTTTGAGGAAGCGCAGAATGCCATAACTGCAATGAATGGAGGTG
AACTTCTTACACAGACCCTGACTGTTGATTGGGCCTTCAGCAATGGGCCT
AGTACTGGACCCTTCAAAAGAAAGAACATGAGGCCTGGACGGACANNNCG
CTCAAGGAGTCCC
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