DN134940
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3) HSP 1 Score: 181.8 bits (460), Expect = 2.417e-45 Identity = 86/141 (60.99%), Postives = 106/141 (75.18%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45 Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45 Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.326e-43 Identity = 81/148 (54.73%), Postives = 103/148 (69.59%), Query Frame = 2 Query: 176 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +G K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG R K+K+M FLRKR N P+ GP HFRAP+KI W+TVRGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRL+ EVGW Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGW 149
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.262e-43 Identity = 80/148 (54.05%), Postives = 103/148 (69.59%), Query Frame = 2 Query: 176 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +G K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG R K+K+M FLRKR N P+ GP HFRAP+KI W+TVRGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRL+ EVGW Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGW 149
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43 Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG R K+KY +LRK P+ G P HFRAP++IF++ VRGMIPHKT +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL+SEVGW Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGW 149
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43 Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 2 Query: 191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGW 148
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43 Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 2 Query: 191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGW 148
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43 Identity = 83/133 (62.41%), Postives = 99/133 (74.44%), Query Frame = 2 Query: 221 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +LGRLA+IVA E+L G KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++GVP PYDK KRMV+P ALK++RL+ K+ LLGRLA EVGW Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGW 133
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 7.278e-42 Identity = 77/148 (52.03%), Postives = 106/148 (71.62%), Query Frame = 2 Query: 176 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 +G+ + VV+D R H+LGRLAS+VAK LL G KV VRCEE+ +SG R K+K++ +LRKR N P+ GP HFRAP++IF++ VRGMIPHKT ++G+P+PYDK +R+V+P A++VL L+ KYC +GRL+ EVGW Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGW 149 The following BLAST results are available for this feature:
BLAST of DN134940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN134940 ID=DN134940; Name=DN134940; organism=Citrus sinensis; type=EST; length=620bpback to top |