DN134940
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41 Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRL 601 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.118e-41 Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 2 Query: 191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ KYC +GRL+SEVGW Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGW 148
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.051e-40 Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 2 Query: 191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+ FL MNT + G H R+P+KIFWR VRGM+PHKT +EGVPAPYDKVKR+V+P AL+V++L KY +L RL+ EVGW Sbjct: 5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGW 147
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.341e-40 Identity = 79/147 (53.74%), Postives = 100/147 (68.03%), Query Frame = 2 Query: 179 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 G+ + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG R K+KYM FLRKR N P+ G H+RAP KIFWRTVRGM+PHKT YEGVPA Y K K + P A + RLQ K+C++GRL+ EVGW Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGW 147
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39 Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG R K+KY FLRK + GP HFRAP++IF++ +RGM+ HKT +EG+P PYDK KR+V+P AL+VLRL+ G KY LG+L++ VGW Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 147
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 1.088e-37 Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG R K+KY FLRK + GP HFRAP++I ++ +RGM+ HKT +EG+P PYDK KR+V+P AL+VLRL+ G KY LG+L++ VGW Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 146
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13 Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 2 Query: 197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 ++++ H+LGRLAS+V+K+LL G++V+ + E+I ++G KY + + + + P GP + R P IF RTVRGM+P+K Y G+P + + + IPDA K ++KG + LG ++ +G Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13 Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619 V+DA H+LGRL+S +AK LLNG+++V V E+ ++G + M + R+ K GP R P +IF RTVRGM+P K+ + GVP + I DAL + ++ K KY L ++ +G+ Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13 Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 2 Query: 191 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 K V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R+R T+ GP + P +I RT+RGM+P+K Y GVP + + IPDA +RL +Y LG ++ ++G Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12 Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 V+DA +LGRLAS VAK+LL+G +++ V E+ +SG +Y R R+R +T+ GP + P +I RT+RGM+P+K Y GVP + + I DA +RL KY LG ++ ++G Sbjct: 3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137 The following BLAST results are available for this feature:
BLAST of DN134940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >DN134940 ID=DN134940; Name=DN134940; organism=Citrus sinensis; type=EST; length=620bpback to top |