DN134940

Overview
NameDN134940
Unique NameDN134940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41
Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRL 601
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.118e-41
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 2
Query:  191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   KYC +GRL+SEVGW
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGW 148          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.051e-40
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 2
Query:  191 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+V++L    KY +L RL+ EVGW
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGW 147          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.341e-40
Identity = 79/147 (53.74%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  179 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            G+  + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG   R K+KYM FLRKR N  P+ G  H+RAP KIFWRTVRGM+PHKT            YEGVPA Y K K +  P A +  RLQ   K+C++GRL+ EVGW
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGW 147          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 147          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.088e-37
Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 146          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  197 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P   GP + R P  IF RTVRGM+P+K             Y G+P  +   + + IPDA K   ++KG +   LG ++  +G
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 619
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G    + M + R+  K        GP   R P +IF RTVRGM+P K+            + GVP      +   I DAL + ++ K  KY  L  ++  +G+
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  191 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            K  V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R+R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + IPDA   +RL    +Y  LG ++ ++G
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            V+DA   +LGRLAS VAK+LL+G +++  V  E+  +SG       +Y R  R+R +T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + I DA   +RL    KY  LG ++ ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
The following BLAST results are available for this feature:
BLAST of DN134940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL13A_PIG1.621e-4160.0060S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
RL16C_SCHPO2.118e-4155.2460S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_DICDI1.051e-4055.2460S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL13A_CAEEL2.341e-4053.7460S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL16A_YEAST7.532e-3952.4860S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST1.088e-3751.0660S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RLSX_METTH2.440e-1332.62Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_ARCFU4.162e-1334.2950S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METAC7.099e-1335.6650S ribosomal protein L13P OS=Methanosarcina aceti... [more]
RL13_METBF7.848e-1235.0050S ribosomal protein L13P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionwca03f05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134940 ID=DN134940; Name=DN134940; organism=Citrus sinensis; type=EST; length=620bp
GAGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAACCCTAGCTCCACATT
NNNGCCTCACATATATATTTGACAACACTCGGAAACCTCCAGTTCGAGAG
AGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAG
AGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGG
TGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCC
AAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGAT
TTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCC
TTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGC
GCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAA
GACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGG
TCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTC
AAGGTTTTGAGGCTTCAAAAGGGTCACAAGTACTGCTTGTTAGGTCGCCT
GGCATCTGAGGTTGGATGGA
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