DN134940

Overview
NameDN134940
Unique NameDN134940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLASEVGW 619
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P  GP + R P  IF R VRGM+P KT            Y G P   ++    + P+ +    + + GH  Y  LG L+ E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      +   I DA   +RL   +KY  LG ++ ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RTVRGM+P KT            Y GVP  ++  +   I +A  + RL    KY  +G +A  +G
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLG 139          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLG 139          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLG 139          
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G
Sbjct:    3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLG 139          
The following BLAST results are available for this feature:
BLAST of DN134940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL13_METKA1.025e-1131.6950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_METMA1.748e-1135.7150S ribosomal protein L13P OS=Methanosarcina mazei... [more]
RL13_PYRKO2.982e-1134.5350S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_PYRFU6.644e-1133.8150S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_PYRAB6.644e-1133.8150S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]
RL13_PYRHO8.677e-1133.8150S ribosomal protein L13P OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionwca03f05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134940 ID=DN134940; Name=DN134940; organism=Citrus sinensis; type=EST; length=620bp
GAGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAACCCTAGCTCCACATT
NNNGCCTCACATATATATTTGACAACACTCGGAAACCTCCAGTTCGAGAG
AGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAG
AGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGG
TGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCC
AAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGAT
TTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCC
TTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGC
GCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAA
GACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGG
TCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTC
AAGGTTTTGAGGCTTCAAAAGGGTCACAAGTACTGCTTGTTAGGTCGCCT
GGCATCTGAGGTTGGATGGA
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