DN134940
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11 Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLASEVGW 619 V+DA + +LGRLAS+VAK +L G+++ + E+ ++G ++ +L+K P GP + R P IF R VRGM+P KT Y G P ++ + P+ + + + GH Y LG L+ E+G+ Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11 Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R R T+ GP + P +I RT+RGM+P+K Y GVP + I DA +RL +KY LG ++ ++G Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11 Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P GP + + +I RTVRGM+P KT Y GVP ++ + I +A + RL KY +G +A +G Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLG 139
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11 Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P GP + + +I RT+RGM+P KT Y G+P + + I +A V RL + KY +G +A +G Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLG 139
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11 Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P GP + + +I RT+RGM+P KT Y G+P + + I +A V RL + KY +G +A +G Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLG 139
BLAST of DN134940 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11 Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 2 Query: 200 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 616 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P GP + + +I RT+RGM+P KT Y G+P + + I +A V RL + KY +G +A +G Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLG 139 The following BLAST results are available for this feature:
BLAST of DN134940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN134940 ID=DN134940; Name=DN134940; organism=Citrus sinensis; type=EST; length=620bpback to top |