DN134932

Overview
NameDN134932
Unique NameDN134932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.526e-35
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  109 EGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 450
            EG V  CH+ E W  +LQ++ +TK+LV V DFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAV-DFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.231e-33
Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  103 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 453
            A EG+VI CHTVE W E+L+ +NE+K+L+V+ DFTA+WC PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVGA KEE+   + KH    +A
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVI-DFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 6.110e-33
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   88 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 441
            A  AA   G+VI  H++E W  Q++++N  K+LVV+ DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVI-DFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 1
Query:   94 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 453
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+ DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:    1 MAATAELIPAGEVIACHTVEDWNNKLKAAKESNKLIVI-DFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 1
Query:   94 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 453
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+ DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVI-DFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 1
Query:   94 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 453
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+ DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVI-DFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 44/98 (44.90%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  133 TVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 426
            T E+W+++L +++   + +VV +F+A+WCGPC+ +APF  EL++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VGA K ELQ+ +
Sbjct:   30 TKESWDDKLAEADRDGK-IVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 43/98 (43.88%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  133 TVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 426
            T E W+++L +++   + +V+ +F+A WCGPC+ IAP+  EL++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VGA K EL + I
Sbjct:   31 TKERWDQKLSEASRDGK-IVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  103 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 432
            +E  +V+   +   W     +  E+ +L+VV DF+ASWCGPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++GAKK+EL++ ++K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVV-DFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  169 NETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 426
            N   + +VVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  GA KE+L+ TI
Sbjct:   16 NSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of DN134932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXH_PICMA8.526e-3558.77Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH3_ARATH1.231e-3358.12Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.110e-3356.78Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA1.274e-3054.03Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL1.274e-3054.03Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA1.274e-3054.03Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH9_ARATH2.408e-2144.90Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC9.151e-2143.88Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH2_ARATH9.151e-2142.73Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE7.747e-2051.16Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca03e06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03e06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134932 ID=DN134932; Name=DN134932; organism=Citrus sinensis; type=EST; length=616bp
CCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGA
TTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGG
CAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTG
GATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAAC
TTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAA
AGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCT
GCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAG
ACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGG
GATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGA
NNNTCATACTGTGGTC
back to top