DN134932

Overview
NameDN134932
Unique NameDN134932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  190 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 426
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 450
            +VV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   89 LVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 453
            +VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   92 IVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  139 EAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 438
            EA ++  Q        V +VDF A+WCGPC  + P + ELA       +  K++VDE  + A  + + ++PT + +K GK+VD++VGA  + +   IAK L
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNM---IAKKL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  133 TVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 399
            TV+  N   Q         VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  148 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 438
            NE+L K  + ++  VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D++ +      + ++PTF F   G  V +  GA +  L+ T+  ++
Sbjct:   10 NEELDKYLQHQR--VVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
The following BLAST results are available for this feature:
BLAST of DN134932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXF_SPIOL1.730e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF1_ARATH1.730e-1138.20Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TRXF_BRANA2.259e-1136.67Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO2_CHLTE2.951e-1135.64Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO1_CORNE2.951e-1138.89Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO3_DICDI6.573e-1135.05Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca03e06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03e06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134932 ID=DN134932; Name=DN134932; organism=Citrus sinensis; type=EST; length=616bp
CCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGA
TTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGG
CAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTG
GATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAAC
TTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAA
AGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCT
GCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAG
ACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGG
GATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGA
NNNTCATACTGTGGTC
back to top