DN134932

Overview
NameDN134932
Unique NameDN134932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 426
            +VVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  GA KE+L++TI
Sbjct:   22 LVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 438
            ++VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   22 LIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.110e-17
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEELQQTI 426
            +VVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEELQQTIAKH 435
            +VV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   22 LVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  148 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 453
            NE L+KS+  +  +++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V GA +  +  TI KH ++  A
Sbjct:   13 NEILEKSDSNR--LIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  115 QVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 426
            +V+   + E+WN  + ++ + +   +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+++ +
Sbjct:    3 RVVKIDSAESWNFYVSQA-KNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 38/97 (39.18%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  151 EQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 441
            EQL + +  K  ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK--IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 429
            +VVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   20 LVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 438
            +VVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA    ++Q IA ++
Sbjct:   21 LVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  151 EQLQKSNETKQLV-----VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 438
            +Q+  S+E K +V     VVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
The following BLAST results are available for this feature:
BLAST of DN134932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_CHICK4.251e-1851.25Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_OPHHA1.615e-1744.05Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_PONAB2.110e-1751.85Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY4.700e-1752.38Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
NGLY1_CAEBR8.017e-1740.20Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXL4_ARATH1.047e-1641.35Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO1_CAEEL1.786e-1639.18Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST5.196e-1650.62Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRX2_YEAST8.864e-1646.43Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
TRX1_SCHPO1.158e-1539.60Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca03e06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03e06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134932 ID=DN134932; Name=DN134932; organism=Citrus sinensis; type=EST; length=616bp
CCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGA
TTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGG
CAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTG
GATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAAC
TTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAA
AGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCT
GCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAG
ACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGG
GATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGA
NNNTCATACTGTGGTC
back to top