DN134932

Overview
NameDN134932
Unique NameDN134932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  187 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 438
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134932 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  136 VEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 438
            ++  +   +K     + +V+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:    5 IQVTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
The following BLAST results are available for this feature:
BLAST of DN134932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_STAAU1.084e-1348.84Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS1.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR1.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN1.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM1.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC1.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB1.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA81.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA31.084e-1348.84Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_CYACA1.084e-1335.92Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionwca03e06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03e06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134932 ID=DN134932; Name=DN134932; organism=Citrus sinensis; type=EST; length=616bp
CCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTA
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAG
CAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGA
TTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGG
CAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTG
GATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAAC
TTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAA
AGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCT
GCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAG
ACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGG
GATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGA
NNNTCATACTGTGGTC
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