DN134927

Overview
NameDN134927
Unique NameDN134927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  171 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            SFK ++ L+ RLAES  I  KYP RIPVI EK  KTD+P I+KKK+LVP D+SVGQF+Y++  R+ LS  KA+FVFV NTLP T ALM ++YE  KD+DGF+YM YS E TFG
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K  +K  HP E R  E  +IR+KYPDR+P+IVEKA K  VPD+D++KYLVP+DL+ GQF  ++RKRI L  E A+F FV NT+PPT A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  165 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            K ++K E+  E+R AE  +IR KYPDRIPVIVEKA K+ + D+DKKKYLVP+DL+VGQF +++RKRI+L  E A+F FV N +P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:    2 KWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 3
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGFLYMTYSGENTFG 509
            M    FK E  LE R  ESA +   YPDRIPVIVEK  ++++P+++K+KYLVP ++ VGQF++++R R+ LS   A+FVFV NTLP T  LM ++YE  KDE DGFLY+ YS E TFG
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
The following BLAST results are available for this feature:
BLAST of DN134927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_BOVIN8.318e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT3.161e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT3.161e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE3.161e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN3.161e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN3.161e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH4.128e-3461.95Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL3_HUMAN3.864e-3254.78Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL2.769e-3053.91Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8D_ORYSJ4.723e-3054.24Autophagy-related protein 8D OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionwca03d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134927 ID=DN134927; Name=DN134927; organism=Citrus sinensis; type=EST; length=698bp
CTTAACAAAANNNNTCCTAAAATAACAAAATAAATTCTCCACAATCAACC
GATCAATCAATCAATCAATCAAATACCTTGAAACCCTACTAATTTCCTTC
TCTTCTCCGATCCACTTCTCGTGTTGTGTTGAAGAGTCATCGTAGCGTCA
GTTTCGCCATGGCCAAAAGTTCATTCAAGCTCGAGCATCCATTGGAGAGG
AGGCTGGCAGAATCTGCTCGCATTAGAGAGAAGTATCCTGACAGGATTCC
GGTGATTGTGGAGAAGGCTGAGAAGACTGATGTTCCTGACATTGACAAGA
AAAAATACCTTGTCCCAGCGGATTTATCTGTGGGACAATTTGTTTATGTT
GTCCGTAAAAGGATTAAGCTCAGTGCAGAAAAGGCCATATTTGTTTTTGT
TAAGAATACTTTACCTCCAACCGGTGCCTTGATGTCTGCTATATATGAGG
AAAACAAGGATGAAGATGGTTTTCTTTACATGACTTACAGTGGAGAGAAT
ACCTTCGGTTGGTCATTTTAAGAGCAAAGGCAACAAGCCATGTATCATAA
AATTTGAAAGTTGTATATTCTCAGTTGATCCCTTTTAAGCCATTCCCAGA
CATGTTCACTGATATCTTGTTTTTATTTTGGGTTGATTGCATCAGTTGAT
AGAAGTAACTCTCGTTAAAATTGGCCCTTAGCGGTAGATATTGAATGG
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