DN134927

Overview
NameDN134927
Unique NameDN134927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 3
Query:  156 AMAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLS---AEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            A+   SFK E+ LE+R   S++IR +Y DR+P+IVE+A  +DVPDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP+  L+S+IY+ +KDEDGFLY+ YSGENTFG
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  171 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            SFK +   + RL ES  I  KYPDRIPVI+EK    D+PD++K KYLVP D++VG F++++ KR++L   KA+FVFV NTLP T + M ++Y   K+EDGFLYM YS E TFG
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  174 FKLEHPLERRLAESARIREKYPDRIPVIVEK-AEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            FK    L  R  E A IR K+P++IPV+VE+   +T +P +DK K+LVP +L++ QF+ ++R R+ L A +A ++ V N +L    A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  162 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  162 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  162 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  162 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +  +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  162 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM  + + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  174 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 512
            FK       R  E  +IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  174 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 512
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of DN134927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8L_DICDI6.169e-3052.46Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8H_ARATH6.169e-3054.87Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN4.431e-2044.74Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN8.357e-1938.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT1.862e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE1.862e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN3.176e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN9.239e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.576e-1739.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT3.511e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca03d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134927 ID=DN134927; Name=DN134927; organism=Citrus sinensis; type=EST; length=698bp
CTTAACAAAANNNNTCCTAAAATAACAAAATAAATTCTCCACAATCAACC
GATCAATCAATCAATCAATCAAATACCTTGAAACCCTACTAATTTCCTTC
TCTTCTCCGATCCACTTCTCGTGTTGTGTTGAAGAGTCATCGTAGCGTCA
GTTTCGCCATGGCCAAAAGTTCATTCAAGCTCGAGCATCCATTGGAGAGG
AGGCTGGCAGAATCTGCTCGCATTAGAGAGAAGTATCCTGACAGGATTCC
GGTGATTGTGGAGAAGGCTGAGAAGACTGATGTTCCTGACATTGACAAGA
AAAAATACCTTGTCCCAGCGGATTTATCTGTGGGACAATTTGTTTATGTT
GTCCGTAAAAGGATTAAGCTCAGTGCAGAAAAGGCCATATTTGTTTTTGT
TAAGAATACTTTACCTCCAACCGGTGCCTTGATGTCTGCTATATATGAGG
AAAACAAGGATGAAGATGGTTTTCTTTACATGACTTACAGTGGAGAGAAT
ACCTTCGGTTGGTCATTTTAAGAGCAAAGGCAACAAGCCATGTATCATAA
AATTTGAAAGTTGTATATTCTCAGTTGATCCCTTTTAAGCCATTCCCAGA
CATGTTCACTGATATCTTGTTTTTATTTTGGGTTGATTGCATCAGTTGAT
AGAAGTAACTCTCGTTAAAATTGGCCCTTAGCGGTAGATATTGAATGG
back to top