DN134911

Overview
NameDN134911
Unique NameDN134911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   99 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 407
            H++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   24 HSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 61/109 (55.96%), Postives = 84/109 (77.06%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CH ++ W  QL  + ++ +L+V+DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:   11 CHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.677e-31
Identity = 62/109 (56.88%), Postives = 82/109 (75.23%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:   11 CHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:   16 CHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:   16 CHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:   16 CHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 44/97 (45.36%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  102 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 392
            T E+W+++L +++   ++VV +F+A+WCGPC+ +APF  EL++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VGA K ELQ+ +
Sbjct:   30 TKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.061e-22
Identity = 43/97 (44.33%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  102 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 392
            T E W+++L +++   ++V+ +F+A WCGPC+ IAP+  EL++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VGA K EL + I
Sbjct:   31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  114 WNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 398
            W     +  E+ +L+VVDF+ASWCGPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++GAKK+EL++ ++K
Sbjct:   36 WQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.628e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  111 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 392
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of DN134911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
TRXH_WHEAT9.202e-3259.22Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH2_BRANA2.050e-3155.96Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH4_ARATH2.677e-3156.88Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_BRARA6.595e-3055.56Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL6.595e-3055.56Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA6.595e-3055.56Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH9_ARATH1.332e-2245.36Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC5.061e-2244.33Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH2_ARATH1.127e-2147.37Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE1.628e-2051.06Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionwca03b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134911 ID=DN134911; Name=DN134911; organism=Citrus sinensis; type=EST; length=629bp
TACGGCCGGGGNNNAATATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGANNGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATNNNGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTA
ATTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTT
CATATTTGTTGTTGAACCTANNTTTGACG
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