DN134911

Overview
NameDN134911
Unique NameDN134911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  111 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 404
            +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   76 SWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 404
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 404
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  144 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 404
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  147 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  108 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 398
            E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L+++I++
Sbjct:  419 EEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 404
            E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   50 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  138 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 398
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V A    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  138 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 31/86 (36.05%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 407
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
The following BLAST results are available for this feature:
BLAST of DN134911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
TRXM_PEA2.784e-1240.00Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
THIO_LISMO3.635e-1239.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN3.635e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_GRIPA3.635e-1243.82Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF1_ARATH4.748e-1238.46Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TXND2_MOUSE8.099e-1236.08Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXM_CHLRE8.099e-1240.00Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TR548_MIMIV1.058e-1135.96Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
GLRX3_XENTR1.058e-1134.41Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_PORYE1.381e-1136.05Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionwca03b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134911 ID=DN134911; Name=DN134911; organism=Citrus sinensis; type=EST; length=629bp
TACGGCCGGGGNNNAATATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGANNGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATNNNGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTA
ATTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTT
CATATTTGTTGTTGAACCTANNTTTGACG
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