DN134900

Overview
NameDN134900
Unique NameDN134900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 104/163 (63.80%), Postives = 136/163 (83.44%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITDXXVCCFMISC 609
            + L+   L+W ++LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL+KP L GIP+LVLGNK D  GAL ++ L ++M L +I D  +CC+ ISC
Sbjct:    2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISC 164          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.213e-59
Identity = 105/163 (64.42%), Postives = 134/163 (82.21%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITDXXVCCFMISC 609
            + L    L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAA  + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I D  +CC+ ISC
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISC 164          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53
Identity = 95/162 (58.64%), Postives = 124/162 (76.54%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITDXXVCCFMIS 606
            M  +E+ +N+ +SLF+KQEMEL+L+GLQ +GKT+LVNV++ GG+ ED IPT+GFNM+KVTKGNVTIKLWD+GGQPRFRSMWERYCR V+AIV+VVD+AD +    S+  L DL+NKP L+ IPLLV+ NK D P +     +   + L+ I    VCC+ IS
Sbjct:    1 MNFFESIINFFKSLFWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCYSIS 162          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.355e-24
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL  +F   L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    1 MGL--SFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 57/151 (37.75%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL   F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    1 MGL--TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    1 MGL--SFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.726e-24
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  127 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            L++ F      LF  +EM + ++GL  AGKT+++  +     S   IPTVGFN+  VT  N+   +WD+GGQ + R +W  Y      +++VVD+AD + +S +R ELH +++   +    LLVL NK D PGALS   +TD + L  + D
Sbjct:    5 LFKGFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLN-QSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKD 154          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.147e-23
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    1 MGL--SFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.498e-23
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL   F   L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    1 MGL--RFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
The following BLAST results are available for this feature:
BLAST of DN134900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARL8A_MOUSE7.607e-6063.80ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8B_PONAB2.213e-5964.42ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8_DICDI9.007e-5358.64ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARF1_SALBA1.355e-2438.41ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_VIGUN5.150e-2437.75ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF_MAIZE5.150e-2437.75ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH5.150e-2437.75ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF2_SCHPO6.726e-2437.75Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF1_ARATH1.147e-2337.75ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_CHLRE1.498e-2337.75ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionwca03a07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134900 ID=DN134900; Name=DN134900; organism=Citrus sinensis; type=EST; length=609bp
TACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGTGGGGG
GTCAATTCAAGGCTTAAATCTCAATTGGTTTCTGATTCTGTGATCATCGT
CATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGAATTGG
CTCCGCAGCCTCTTTTTTAAACAGGAAATGGAGCTGTCCCTGATTGGACT
TCAAAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTGGTGGAT
ATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAAGTGACA
AAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACCTAGATT
CCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTGTTTACG
TGGTGGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGTGAACTT
CATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTGCTGGTGCT
AGGGAACAAGGTTGACAAACCCGGAGCTCTATCTAAACAGGCTTTAACTG
ATGAAATGGGACTAAAATCCATCACCGACNNNNNAGTTTGCTGCTTTATG
ATCTCATGC
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