DN134900

Overview
NameDN134900
Unique NameDN134900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 46/159 (28.93%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  142 LNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDM-----------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA-VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            ++++++LF F    ++ ++G++N GKT+L+  +    YSE++           IPT GFN+  +    V   +WD+GG+   R  +  Y  + + +I++V D++D ++L  S+ E   L N+ SL  +P L++ NK D    L +Q +  +  LK+  D
Sbjct:    5 ISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKF-YSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQD----LKQQTIEIDEILKTYFD 158          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 37/135 (27.41%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  169 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            ++  ++ ++GL  AGKTS+++ +A+      + PT GF+   +   +  ++  ++GG   FRS WE Y      +++VVD+AD   L  ++  LH L+    +  +PL+V  NK D   A     + + + L  +
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALALSEV 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 41/154 (26.62%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS---GIPLLVLGNKVD---KPGALSKQALTDEMGLKSITDXXVCCFMISC 609
            +E+   ++GL N+GK+++VN +       ++ ++PTVGF +  +   +VTI LWD+GGQ   R  W+ Y     A+++ +D +       +  EL +L+N+          ++V+ NK+D       L ++ L  E  LK +    +   ++ C
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDLVEDKSELHRRCLLVESELKCLFKPDIRIELVKC 168          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 39/143 (27.27%), Postives = 68/143 (47.55%), Query Frame = 1
Query:  151 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            L S+F  QE  + ++GL N GKT+++    T      M PT+G N+ ++        +WD+        +W  Y      I+ V+D+ D D L  +R EL+ +L   +L    +L+  NK D   ++    ++  + L +I D
Sbjct:    8 LMSIFGNQEHTVIIVGLDNEGKTTILYRFLTNEVVH-MCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKD 149          
The following BLAST results are available for this feature:
BLAST of DN134900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARLX_DICDI1.718e-1128.93ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL9_HUMAN2.931e-1127.41ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
CIN4_YEAST3.828e-1126.62GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL5C_HUMAN3.828e-1127.27Putative ADP-ribosylation factor-like protein 5C O... [more]

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Properties
Property NameValue
Genbank descriptionwca03a07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134900 ID=DN134900; Name=DN134900; organism=Citrus sinensis; type=EST; length=609bp
TACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGTGGGGG
GTCAATTCAAGGCTTAAATCTCAATTGGTTTCTGATTCTGTGATCATCGT
CATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGAATTGG
CTCCGCAGCCTCTTTTTTAAACAGGAAATGGAGCTGTCCCTGATTGGACT
TCAAAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTGGTGGAT
ATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAAGTGACA
AAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACCTAGATT
CCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTGTTTACG
TGGTGGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGTGAACTT
CATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTGCTGGTGCT
AGGGAACAAGGTTGACAAACCCGGAGCTCTATCTAAACAGGCTTTAACTG
ATGAAATGGGACTAAAATCCATCACCGACNNNNNAGTTTGCTGCTTTATG
ATCTCATGC
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