DN134898 | Citrus Genome Database

Overview


Name	DN134898
Unique Name	DN134898
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	422

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in Vulnus5 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_PANGI (Photosystem II reaction center protein I OS=Panax ginseng GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_OLIPU (Photosystem II reaction center protein I OS=Olimarabidopsis pumila GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_OENPA (Photosystem II reaction center protein I OS=Oenothera parviflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_OENGL (Photosystem II reaction center protein I OS=Oenothera glazioviana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_OENEH (Photosystem II reaction center protein I OS=Oenothera elata subsp. hookeri GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_OENBI (Photosystem II reaction center protein I OS=Oenothera biennis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_OENAR (Photosystem II reaction center protein I OS=Oenothera argillicola GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_NYMAL (Photosystem II reaction center protein I OS=Nymphaea alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_NICTO (Photosystem II reaction center protein I OS=Nicotiana tomentosiformis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_NICSY (Photosystem II reaction center protein I OS=Nicotiana sylvestris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of DN134898 vs. ExPASy Swiss-Prot

BLAST of DN134898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_PANGI	7.158e-14	100.00	Photosystem II reaction center protein I OS=Panax ...	[more]
PSBI_OLIPU	7.158e-14	100.00	Photosystem II reaction center protein I OS=Olimar...	[more]
PSBI_OENPA	7.158e-14	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENGL	7.158e-14	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENEH	7.158e-14	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENBI	7.158e-14	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENAR	7.158e-14	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_NYMAL	7.158e-14	100.00	Photosystem II reaction center protein I OS=Nympha...	[more]
PSBI_NICTO	7.158e-14	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_NICSY	7.158e-14	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]

Pages

Properties


Property Name	Value
Genbank description	wca03a04 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN134898 ID=DN134898; Name=DN134898; organism=Citrus sinensis; type=EST; length=422bp
CGGCCGGGGATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAG
ATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTC
TTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAA
TCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTAT
AAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAA
AAGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAAC
GGAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATT
AGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA