DN134898

Overview
NameDN134898
Unique NameDN134898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of DN134898 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   59 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 166
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
The following BLAST results are available for this feature:
BLAST of DN134898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_AETGR7.158e-14100.00Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_AETCO7.158e-14100.00Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_ACOCL7.158e-14100.00Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_ACOAM7.158e-14100.00Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_SILLA1.595e-1397.22Photosystem II reaction center protein I OS=Silene... [more]
PSBI_PIPCE1.595e-1397.22Photosystem II reaction center protein I OS=Piper ... [more]
PSBI_ORYSJ1.595e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSI1.595e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSA1.595e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYNI1.595e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca03a04 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134898 ID=DN134898; Name=DN134898; organism=Citrus sinensis; type=EST; length=422bp
CGGCCGGGGATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAG
ATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTC
TTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAA
TCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTAT
AAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAA
AAGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAAC
GGAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATT
AGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
back to top