CX044067

Overview
NameCX044067
Unique NameCX044067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.629e-34
Identity = 77/173 (44.51%), Postives = 114/173 (65.90%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR--------RIGFDLDYDE-----------KDSS-YNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461
            GRLTDSKGRT+DF+NT++IMT+N+G+ +IEK           +  F +D              KDS+ + ++  LV EELK++FRPEFLNR+DE+IVF  LTK ++ EI  +M+K++  RL+ K++ L+            GY+P YGARPLRRA+MRLLED++A++ L++ +
Sbjct:  652 GRLTDSKGRTIDFRNTMIIMTTNLGAKIIEKESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.476e-33
Identity = 71/153 (46.41%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461
            GRLTD +GRTVDFKNT+LI TSN+G+S I K    +G        ++ Y R+K  V +ELK++FRPEFLNR+D++IVF QL++ E+  + D+M+  V ++LK KD+ L+            G++P  GARPLRR I R +ED ++EK+L  E+
Sbjct:  645 GRLTDGQGRTVDFKNTVLIFTSNLGTSDISKP---VGLGFTQGSGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLSRDEIIRMVDLMISRVANQLKVKDMTLELTNKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.105e-32
Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461
            GRLTD +GRTVDFKNT+LI TSN+G+S I K    +G        ++ Y R+K  V +ELK++FRPEFLNR+D++IVF QLT+ E+  + D+M+  V  +LK+KD+ L             G++P  GARPLRR I R +ED ++EK+L  E+
Sbjct:  645 GRLTDGQGRTVDFKNTVLIFTSNLGTSDISKP---VGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.105e-32
Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461
            GRLTD +GRTVDFKNT+LI TSN+G+S I K    +G        ++ Y R+K  V +ELK++FRPEFLNR+D++IVF QLT+ E+  + D+M+  V  +LK+KD+ L             G++P  GARPLRR I R +ED ++EK+L  E+
Sbjct:  645 GRLTDGQGRTVDFKNTVLIFTSNLGTSDISKP---VGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.221e-31
Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTDS GRTVDF+NT++I+TSN+GS +I +G           +K   Y RI+  V + L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L  +  RL  K I L+            GY+P +GARPLRR I R LE  +A+K+LA E+KE
Sbjct:  687 GRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL----------QKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.221e-31
Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTDS GRTVDF+NT++I+TSN+GS +I +G           +K   Y RI+  V + L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L  +  RL  K I L+            GY+P +GARPLRR I R LE  +A+K+LA E+KE
Sbjct:  687 GRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL----------QKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.034e-30
Identity = 67/155 (43.23%), Postives = 101/155 (65.16%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTDS GRTVDF+NT++IMTSN+GS  +      I  D D +  +  + + K  V EELK Y RPEF+NR+DE+IVF+ LT  E+ +I D+++  V  RL  ++I+++            GY+P++GARPL+R I + +E  +A+K++  EIK+
Sbjct:  818 GRLTDSHGRTVDFRNTVIIMTSNIGSQYL----LNIPVDADEETLNREFEKAKEKVLEELKLYMRPEFINRIDEIIVFKPLTMRELSKIIDLLIANVNKRLAERNIKIELTEEAKKELVRRGYDPAFGARPLKRTIQKYVETPLADKIIRGEIKD 968          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGRTVDF+NT++IMTSNVG+  ++   R  GF    D +D  Y  I+  + +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQ-RFAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGRTVDF+NT++IMTSNVG+  ++   R  GF    D +D  Y  I+  + +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQ-RFAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGRTVDF+NT++IMTSNVG+  ++   R  GF    D +D  Y  I+  + +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQ-RFAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782          
The following BLAST results are available for this feature:
BLAST of CX044067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CLPC_ODOSI2.629e-3444.51ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCLE6.476e-3346.41Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCTU1.105e-3247.06Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO1.105e-3247.06Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_THET81.221e-3148.39Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET21.221e-3148.39Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_AQUAE1.034e-3043.23Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPC_STAAW2.547e-2946.31ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS2.547e-2946.31ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR2.547e-2946.31ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_15B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B06-C11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044067 ID=CX044067; Name=CX044067; organism=Citrus sinensis; type=EST; length=863bp
ATGGAAGATTGACAGACAGCAAGGGAAGAACTGTAGACTTCAAGAATACT
CTTCTAATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAGGGAGG
ACGCCGCATTGGTTTTGATCTTGATTATGATGAGAAAGACAGCAGTTACA
ACAGGATTAAGAGTCTGGTAACTGAGGAATTGAAGCAGTACTTCAGGCCA
GAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGACAACTCACCAA
GCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGAGGTGTTTGATA
GACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGAGATTTAGGGAG
AGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCAAGGCCATTGAG
AAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTG
CAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATGTCGATTCTGAT
GGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCAGAATCATTGGC
AGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTGAGATGTTGTTT
GTACTTCCATTTTGATTTCAACTGGCTAGATACTCAGTCTGTTTTCTTGG
AAGGACTACTTGGCAGTAGATTTGGAAGCTGTTGATTAAATCGGTGGTGG
TTGGGTTTTAAGGCTGTATTCGTGACACCATATGAAAATAGAGTACACGG
TTCAGTTCAGTAGCAGCAGATAGTGGGAAAGTTGCAGTCAGTTGCTAGTG
TTAGGTTTCATATTGTTATTATTATTATTATTCAGTTCTCATCATTATTT
GCTTTCTTCTTTA
back to top