CX044067
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.629e-34 Identity = 77/173 (44.51%), Postives = 114/173 (65.90%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR--------RIGFDLDYDE-----------KDSS-YNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461 GRLTDSKGRT+DF+NT++IMT+N+G+ +IEK + F +D KDS+ + ++ LV EELK++FRPEFLNR+DE+IVF LTK ++ EI +M+K++ RL+ K++ L+ GY+P YGARPLRRA+MRLLED++A++ L++ + Sbjct: 652 GRLTDSKGRTIDFRNTMIIMTTNLGAKIIEKESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 6.476e-33 Identity = 71/153 (46.41%), Postives = 102/153 (66.67%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461 GRLTD +GRTVDFKNT+LI TSN+G+S I K +G ++ Y R+K V +ELK++FRPEFLNR+D++IVF QL++ E+ + D+M+ V ++LK KD+ L+ G++P GARPLRR I R +ED ++EK+L E+ Sbjct: 645 GRLTDGQGRTVDFKNTVLIFTSNLGTSDISKP---VGLGFTQGSGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLSRDEIIRMVDLMISRVANQLKVKDMTLELTNKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.105e-32 Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461 GRLTD +GRTVDFKNT+LI TSN+G+S I K +G ++ Y R+K V +ELK++FRPEFLNR+D++IVF QLT+ E+ + D+M+ V +LK+KD+ L G++P GARPLRR I R +ED ++EK+L E+ Sbjct: 645 GRLTDGQGRTVDFKNTVLIFTSNLGTSDISKP---VGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.105e-32 Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 461 GRLTD +GRTVDFKNT+LI TSN+G+S I K +G ++ Y R+K V +ELK++FRPEFLNR+D++IVF QLT+ E+ + D+M+ V +LK+KD+ L G++P GARPLRR I R +ED ++EK+L E+ Sbjct: 645 GRLTDGQGRTVDFKNTVLIFTSNLGTSDISKP---VGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.221e-31 Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467 GRLTDS GRTVDF+NT++I+TSN+GS +I +G +K Y RI+ V + L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L + RL K I L+ GY+P +GARPLRR I R LE +A+K+LA E+KE Sbjct: 687 GRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL----------QKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.221e-31 Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467 GRLTDS GRTVDF+NT++I+TSN+GS +I +G +K Y RI+ V + L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L + RL K I L+ GY+P +GARPLRR I R LE +A+K+LA E+KE Sbjct: 687 GRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL----------QKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.034e-30 Identity = 67/155 (43.23%), Postives = 101/155 (65.16%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467 GRLTDS GRTVDF+NT++IMTSN+GS + I D D + + + + K V EELK Y RPEF+NR+DE+IVF+ LT E+ +I D+++ V RL ++I+++ GY+P++GARPL+R I + +E +A+K++ EIK+ Sbjct: 818 GRLTDSHGRTVDFRNTVIIMTSNIGSQYL----LNIPVDADEETLNREFEKAKEKVLEELKLYMRPEFINRIDEIIVFKPLTMRELSKIIDLLIANVNKRLAERNIKIELTEEAKKELVRRGYDPAFGARPLKRTIQKYVETPLADKIIRGEIKD 968
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29 Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449 G LTD+KGRTVDF+NT++IMTSNVG+ ++ R GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+ ++ +RL ++I + GY+P YGARPL RAI + +ED+++E +L Sbjct: 637 GHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQ-RFAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29 Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449 G LTD+KGRTVDF+NT++IMTSNVG+ ++ R GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+ ++ +RL ++I + GY+P YGARPL RAI + +ED+++E +L Sbjct: 637 GHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQ-RFAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29 Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3 Query: 3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449 G LTD+KGRTVDF+NT++IMTSNVG+ ++ R GF D +D Y I+ + +ELK FRPEFLNR+D++IVF +LTK E+KEI +M+ ++ +RL ++I + GY+P YGARPL RAI + +ED+++E +L Sbjct: 637 GHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQ-RFAGFGGSSDGQD--YETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782 The following BLAST results are available for this feature:
BLAST of CX044067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >CX044067 ID=CX044067; Name=CX044067; organism=Citrus sinensis; type=EST; length=863bpback to top |