CX044067

Overview
NameCX044067
Unique NameCX044067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 64/155 (41.29%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTD KG+ ++FKNT++I+TSNVGS  I          ++   K + Y  I+ +V  +LK YF+PEFLNRLDE I+F+ L K ++K+I  + + +V  RLK K +E++            GYNP YGARP++R I   LE  +A+ +L  + +E
Sbjct:  704 GRLTDGKGKNINFKNTIIILTSNVGSESI----------IEMTNKKNEYELIEEVVRNQLKNYFKPEFLNRLDEQIIFKSLKKEDLKKIVKLQIDKVKARLKDKGLEIELNEKVIDWIADKGYNPIYGARPIKRIIQTKLETKLAKMILKSKSEE 848          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGRTVDF+NT++IMTSNVG+  ++   R  GF      + S Y  ++  + +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++  RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQ-RFAGFG--GASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGRTVDF+NT++IMTSNVG+  ++   R  GF      + S Y  ++  + +ELK  FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++  RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQ-RFAGFG--GASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 65/155 (41.94%), Postives = 99/155 (63.87%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTD +GRTVDF+NT++IMTSN+GS  I++ G             S Y R+K++VTE LK+ F+PEFLNR+DE++++  L   ++K+I DI ++ +  RL  + I L+            GY+P+YGARPL+R I R ++D +A  +L  + +E
Sbjct:  703 GRLTDGQGRTVDFRNTVIIMTSNLGSQWIQQYG------------SSDYARMKAMVTETLKEGFKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEGKFQE 845          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 68/155 (43.87%), Postives = 103/155 (66.45%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            G+LTD+ GR VDF NT++I+TSN+G+  I KG   +GF+    EKD+  N IK+   EELKQ F PEFLNR+D++IVF  L+K ++K+I +IMLKE+ + +K ++I +             G++  YGAR LRRAI + +ED ++ ++L   I++
Sbjct:  646 GQLTDNFGRKVDFSNTIIIITSNLGARDIVKGSS-LGFNAVGSEKDA--NDIKNFALEELKQNFNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKELNEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIED 797          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 63/150 (42.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 452
            GRLTD +GRTVDF+NT+++MTSN+GS  I+        +L  D+    Y ++K+ V E ++ +FRPEF+NRLD+++VF  L K ++K+IA I L+ +  RL   +++L             G++P YGARPL+RAI   LE+ +A+++LA
Sbjct:  697 GRLTDGQGRTVDFRNTVIVMTSNLGSHQIQ--------ELSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILA 838          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 66/155 (42.58%), Postives = 98/155 (63.23%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTD +GRTVDFKNT++IMTSN+GS  + + G       D D+ DS    ++ LV E ++ +FRPEFLNR+D++I+F +L + E+  I +I LK +   L  + I L+            GY+P+YGARPL+R I + ++D +AE +L  EI +
Sbjct:  699 GRLTDGQGRTVDFKNTIIIMTSNLGSEFMTQMG-------DNDDVDS----VRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPD 842          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GR+TDS+GRTVDFKNT+LI+TSN+GS  I          LD    DS Y  ++S VTE L+  FRPEFLNR+DE I+F  L K ++++I  I L  + +RL  + + L             G++P YGARPL+R I R LE ++A+ +L  +  +
Sbjct:  703 GRVTDSRGRTVDFKNTILILTSNIGSQYI----------LDVAGDDSRYEEMRSRVTEALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRGQFSD 847          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.070e-27
Identity = 66/149 (44.30%), Postives = 99/149 (66.44%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGR VDF+NT++IMTSNVG+  ++   R  GF    + +D  Y  I+  + +ELK  FRPEFLNR+D++IVF +L+K E+K+I  +M+ ++ +RL  +DI +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRRVDFRNTVIIMTSNVGAQELQDQ-RFAGFGGATEGQD--YESIRKTMMKELKNAFRPEFLNRVDDIIVFHKLSKDELKQIVTMMVNKLTNRLSEQDINISVTEAAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 67/149 (44.97%), Postives = 97/149 (65.10%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 449
            G LTD+KGR VDF+NT++IMTSNVG+  ++   R  GF    +  D  Y  I+  + +ELK  FRPEFLNR+D++IVF +L+K E+KEI  +M+ ++  RL  +DI +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  637 GHLTDTKGRQVDFRNTVIIMTSNVGAQELQDQ-RFAGFGGGSEGHD--YETIRKTMMKELKNSFRPEFLNRVDDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
The following BLAST results are available for this feature:
BLAST of CX044067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CLPB_PROMA2.816e-2841.29Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPC_STAES4.803e-2844.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ4.803e-2844.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_GEOSL4.803e-2841.94Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
HLYB_TREHY8.193e-2843.87Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPB_XYLFA8.193e-2842.00Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_AGRT58.193e-2842.58Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB1_SYNE78.193e-2843.23Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPC_STAS11.070e-2744.30ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAHJ1.397e-2744.97ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B06-C11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044067 ID=CX044067; Name=CX044067; organism=Citrus sinensis; type=EST; length=863bp
ATGGAAGATTGACAGACAGCAAGGGAAGAACTGTAGACTTCAAGAATACT
CTTCTAATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAGGGAGG
ACGCCGCATTGGTTTTGATCTTGATTATGATGAGAAAGACAGCAGTTACA
ACAGGATTAAGAGTCTGGTAACTGAGGAATTGAAGCAGTACTTCAGGCCA
GAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGACAACTCACCAA
GCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGAGGTGTTTGATA
GACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGAGATTTAGGGAG
AGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCAAGGCCATTGAG
AAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTG
CAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATGTCGATTCTGAT
GGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCAGAATCATTGGC
AGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTGAGATGTTGTTT
GTACTTCCATTTTGATTTCAACTGGCTAGATACTCAGTCTGTTTTCTTGG
AAGGACTACTTGGCAGTAGATTTGGAAGCTGTTGATTAAATCGGTGGTGG
TTGGGTTTTAAGGCTGTATTCGTGACACCATATGAAAATAGAGTACACGG
TTCAGTTCAGTAGCAGCAGATAGTGGGAAAGTTGCAGTCAGTTGCTAGTG
TTAGGTTTCATATTGTTATTATTATTATTATTCAGTTCTCATCATTATTT
GCTTTCTTCTTTA
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