CX044010

Overview
NameCX044010
Unique NameCX044010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS9 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9902) GN=hemA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I V+GLS  TAPVE+RE+L+IPE     ++  L   + + EA++LSTCNR+EIY +      GV  V E++S  SG+   EL  H F  +++DA  HL  V+AGL
Sbjct:    3 IAVVGLSHRTAPVEIRERLSIPEQSMEMSLKTLRGNDQVLEASILSTCNRLEIYTLVRHPELGVGAVNEFLSNHSGLQTGELSPHLFNFHHQDAVDHLLRVAAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_SYNPW (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain WH7803) GN=hemA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I V+GLS  TAPVE+REKL+IPE     ++  L   + + EA++LSTCNR+EIY +  +   G+  V E++S  SG+   +L  H F  +++DA  HL  V+AGL
Sbjct:    3 IAVVGLSHRTAPVEVREKLSIPEQTMEESLQNLRGHDQVLEASILSTCNRLEIYTLVRNPELGISAVREFLSSHSGLETGDLKPHLFAYHHEDAVGHLLRVAAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_SYNSC (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9605) GN=hemA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I V+GLS  TAPVE+RE+L+IPE     ++  L     + EA++LSTCNR+EIY +  +   GV  V++++S  SG+   EL  H F  +++DA  HL  V+AGL
Sbjct:    3 ISVVGLSHRTAPVEIRERLSIPEQTMETSLQSLRGNEQVLEASILSTCNRLEIYTLVRNPDLGVSAVSDFLSSHSGLETGELTPHLFSYHHEDAVDHLMRVAAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_SYNPX (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain WH8102) GN=hemA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I V+GLS  TAPVE+RE+L+IPE     ++  L     + EA++LSTCNR+EIY +      GV  V+E++S  SG+   EL  H F  +++DA  HL  V+AGL
Sbjct:    3 IAVVGLSHRTAPVEIRERLSIPEQTMETSLQSLRGHEQVLEASILSTCNRLEIYTLVRHPDLGVSAVSEFLSGHSGLATGELTPHLFNYHHEDAVDHLMRVAAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_PROM9 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            IVV+GLS  TAPVE+REKL+IP+    +++  L   + + E ++LSTCNR+EIY +   ++ G+  + E++S  SGI   +L  H F    +DA  HL +VSAGL
Sbjct:    3 IVVVGLSHRTAPVEVREKLSIPDQSITKSLKALKAFSEVLEVSILSTCNRLEIYALVKDKNTGISSIKEFISDYSGIIFEDLNPHLFCFRQEDAVLHLMKVSAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_PROMS (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain AS9601) GN=hemA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            IVV+GLS  TAPVE+REKL+IP+     ++  L   + + E ++LSTCNRMEIY +   ++ G+  + E++S+ SGI   +L  H F    ++A  HL +VSAGL
Sbjct:    3 IVVVGLSHRTAPVEVREKLSIPDQSITESLKALKAFSDVLEVSILSTCNRMEIYALVKDKNTGISSIKEFISEYSGIIFEDLNPHLFCFRQEEAVLHLMKVSAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_PROM2 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.508e-17
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            IVV+G+S  TAPVE+REKL+IP+     ++  L   + + E ++LSTCNR+EIY +A  ++ G+  + E++S+ SGI   +L  H F    ++A  HL +VSAGL
Sbjct:    3 IVVVGVSHRTAPVEVREKLSIPDHSITESLKALKAFSEVLEVSILSTCNRLEIYALAKDKNTGISSIKEFLSEYSGIIFEDLDPHLFCFRQEEAVLHLMKVSAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS3 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9311) GN=hemA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I V+GLS  TAPVE+REKL+IPE     ++  L N   + EA++LSTCNR+EIY +  +   G+  V +++S  SG+   +L  H F  ++ +A  HL  V+AGL
Sbjct:    3 IAVVGLSHRTAPVEVREKLSIPEQTMEESLQNLRNHEQVLEASILSTCNRLEIYTLVRNPDLGIAAVRDFLSGHSGLESRDLSPHLFTYHHDEAIAHLMRVTAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_PROM0 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            IVV+GLS  TAPVE+REKL+IP+     ++  L   + + E ++LSTCNR+EIY +   ++ G+  + E++S+ SGI   +L  H F    ++A  HL +VSAGL
Sbjct:    3 IVVVGLSHRTAPVEVREKLSIPDQSITESLKALKAFSDVLEVSILSTCNRLEIYALVKDKNTGISSIKEFISEYSGIIFDDLNPHLFCFRQEEAVLHLMKVSAGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_PROMM (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.388e-17
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I V+GLS  TAPVE+REKL+IPE     ++  L   + I E ++LSTCNR+EIY +     RG+  +++++ + SG+   +L  H F  ++ +A  HL  V+AGL
Sbjct:    3 IAVVGLSHRTAPVEIREKLSIPEQTMETSLQTLRGNDQILEVSILSTCNRLEIYTLVRHPERGISAISDFLGQHSGLATEDLSPHLFNFHHDEAVAHLMRVAAGL 107
The following BLAST results are available for this feature:
BLAST of CX044010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HEM1_SYNS93.039e-1844.76Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_SYNPW3.039e-1843.81Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_SYNSC5.184e-1843.81Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_SYNPX5.184e-1844.76Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROM96.770e-1843.81Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROMS1.155e-1743.81Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM21.508e-1742.86Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_SYNS33.360e-1742.86Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROM03.360e-1742.86Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROMM4.388e-1740.95Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G11-N22-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044010 ID=CX044010; Name=CX044010; organism=Citrus sinensis; type=EST; length=796bp
TTTTGCAGTCGCCAAAGACACCAAATCAAACCAAATACGAAAAAGCTCCA
CGGAGATTTGTTCAACAGCCCATAAAACCTCTGTATACCCTCCCATCCGG
CGTCAATTTTTTTGAGGGGTCTGGGGGTTTTATCATTATTATCATTAGGG
CACAAGATAATTTTTGAACGAAGATTCAGAATCATGTCGTTTTCAAGTGG
ATTTGCCACCGCTTTGGCCGGTTCAAAGATGGAAACAACTTTGTTATTCA
ATCTTTCTTCTTCCTCTTCTTCTTCTTCAGCGTTGTTTATGAAGGGTGTT
CAAAGTCAACTCGGTCAACAAATACGGGTGGCTTGTAAACCAAATCGGAA
CGAGAGAAATTTGCAGCAGAGCCGGAGAGGCGTTGTTAGATGCGAAGTCG
CAGTTGATCCCTCCTCCGCTTCCGCCCTCGAGCAGCTCAAGGCCTCTGCC
CCTGACCGATACACGAAGGAAAGGAGCAGCATTGTGGTCATTGGGCTCAG
TGTTCACACTGCACCTGTTGAGATGCGAGAAAAACTTGCCATTCCTGAGG
CTGAATGGCCACGGGCCATCGGAGAGTTGTGTAACTTAAATCATATAGAG
GAGGCCGCTGTCCTTAGCACCTGCAACAGAATGGAGATATATGTTGTAGC
TCTCTCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCAAAGA
CAAGTGGGATCCCCGTTGCAGAGCTTTGTGAGCACCGGTTTTTGCTGTAT
AACAAAGATGCTACACAGCATCTCTTTGAAGTATCAGCGGGTCTTG
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