CX044010

Overview
NameCX044010
Unique NameCX044010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCPA (Glutamyl-tRNA reductase OS=Mycobacterium paratuberculosis GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 36/106 (33.96%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + +  +     + EA VLSTCNR+E+Y V  + H G+  + + +S  SG+ +++L ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVSVLEQLSIDESDHGKIVDRVLQSPLVTEAMVLSTCNRVEVYAVVDAFHGGLAVIGQVLSDHSGMSMSDLTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCA1 (Glutamyl-tRNA reductase OS=Mycobacterium avium (strain 104) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 36/106 (33.96%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + +  +     + EA VLSTCNR+E+Y V  + H G+  + + +S  SG+ +++L ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVSVLEQLSIDESDHGKIVDRVLQSPLVTEAMVLSTCNRVEVYAVVDAFHGGLAVIGQVLSDHSGMSMSDLTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_LYSSC (Glutamyl-tRNA reductase OS=Lysinibacillus sphaericus (strain C3-41) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:  484 VVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            +V+GL+  TAPVE+REKL+  E+E P+A+  L     I E  ++STCNR EIY V    H G   V ++++    +PV     +  +    +A +HLF+V+AG+
Sbjct:    4 IVVGLNYKTAPVEIREKLSFIESELPQAMEALQKQKSILENVIVSTCNRTEIYAVVDQLHTGRHFVKQFLADWFDLPVETFSSYLTIREEDEAVEHLFKVTAGI 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCTU (Glutamyl-tRNA reductase OS=Mycobacterium tuberculosis GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 37/106 (34.91%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + I  +     + EA VLSTCNR+E+Y V  + H G+  + + +++ SG+ + EL ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVVVLEQLSIDESDQVKIIDRVLASPLVTEAMVLSTCNRVEVYAVVDAFHGGLSVIGQVLAEHSGMSMGELTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCTA (Glutamyl-tRNA reductase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 37/106 (34.91%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + I  +     + EA VLSTCNR+E+Y V  + H G+  + + +++ SG+ + EL ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVVVLEQLSIDESDQVKIIDRVLASPLVTEAMVLSTCNRVEVYAVVDAFHGGLSVIGQVLAEHSGMSMGELTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCBT (Glutamyl-tRNA reductase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 37/106 (34.91%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + I  +     + EA VLSTCNR+E+Y V  + H G+  + + +++ SG+ + EL ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVVVLEQLSIDESDQVKIIDRVLASPLVTEAMVLSTCNRVEVYAVVDAFHGGLSVIGQVLAEHSGMSMGELTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCBP (Glutamyl-tRNA reductase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 37/106 (34.91%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + I  +     + EA VLSTCNR+E+Y V  + H G+  + + +++ SG+ + EL ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVVVLEQLSIDESDQVKIIDRVLASPLVTEAMVLSTCNRVEVYAVVDAFHGGLSVIGQVLAEHSGMSMGELTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_MYCBO (Glutamyl-tRNA reductase OS=Mycobacterium bovis GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 37/106 (34.91%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            S+++ G+S  +APV + E+L+I E++  + I  +     + EA VLSTCNR+E+Y V  + H G+  + + +++ SG+ + EL ++ ++ Y++ A +HLF V++GL
Sbjct:    2 SVLLFGVSHRSAPVVVLEQLSIDESDQVKIIDRVLASPLVTEAMVLSTCNRVEVYAVVDAFHGGLSVIGQVLAEHSGMSMGELTKYAYVRYSEAAVEHLFAVASGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_DESRM (Glutamyl-tRNA reductase OS=Desulfotomaculum reducens (strain MI-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:  481 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            I VIG++  TAP+E+REKLA  E     ++  L +   I+  A++STCNR EIY+  +    G+  V  ++S+ SG+ ++E+    F     DA +HLF V +GL
Sbjct:    3 IAVIGVNHRTAPLEVREKLAFTEWGMKDSLKRLMSYPGIDGCAIVSTCNRTEIYIAPMELDSGMSSVWSFLSEKSGLDISEIKNFTFCHTLYDAIRHLFRVVSGL 107
[Close]
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_SULSY (Glutamyl-tRNA reductase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.558e-13
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:  493 GLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVK-EVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            G +  TAPVE+REKLAI E  +   + +L ++  I E  V+STCNR+E+Y V+      VK E+   +S+ S +PV  L ++ F   NK+A +H+F VS+ L
Sbjct:    7 GFNYKTAPVEIREKLAITENNYGLILEKLNSIEDIYEICVISTCNRVELYGVSNDNIEKVKEEILRILSQYSTVPVNTLKDYLFFYTNKEAIRHIFRVSSSL 108
The following BLAST results are available for this feature:
BLAST of CX044010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HEM1_MYCPA1.726e-1333.96Glutamyl-tRNA reductase OS=Mycobacterium paratuber... [more]
HEM1_MYCA11.726e-1333.96Glutamyl-tRNA reductase OS=Mycobacterium avium (st... [more]
HEM1_LYSSC1.726e-1338.46Glutamyl-tRNA reductase OS=Lysinibacillus sphaeric... [more]
HEM1_MYCTU2.254e-1334.91Glutamyl-tRNA reductase OS=Mycobacterium tuberculo... [more]
HEM1_MYCTA2.254e-1334.91Glutamyl-tRNA reductase OS=Mycobacterium tuberculo... [more]
HEM1_MYCBT2.254e-1334.91Glutamyl-tRNA reductase OS=Mycobacterium bovis (st... [more]
HEM1_MYCBP2.254e-1334.91Glutamyl-tRNA reductase OS=Mycobacterium bovis (st... [more]
HEM1_MYCBO2.254e-1334.91Glutamyl-tRNA reductase OS=Mycobacterium bovis GN=... [more]
HEM1_DESRM5.021e-1338.10Glutamyl-tRNA reductase OS=Desulfotomaculum reduce... [more]
HEM1_SULSY6.558e-1341.18Glutamyl-tRNA reductase OS=Sulfurihydrogenibium sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G11-N22-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044010 ID=CX044010; Name=CX044010; organism=Citrus sinensis; type=EST; length=796bp
TTTTGCAGTCGCCAAAGACACCAAATCAAACCAAATACGAAAAAGCTCCA
CGGAGATTTGTTCAACAGCCCATAAAACCTCTGTATACCCTCCCATCCGG
CGTCAATTTTTTTGAGGGGTCTGGGGGTTTTATCATTATTATCATTAGGG
CACAAGATAATTTTTGAACGAAGATTCAGAATCATGTCGTTTTCAAGTGG
ATTTGCCACCGCTTTGGCCGGTTCAAAGATGGAAACAACTTTGTTATTCA
ATCTTTCTTCTTCCTCTTCTTCTTCTTCAGCGTTGTTTATGAAGGGTGTT
CAAAGTCAACTCGGTCAACAAATACGGGTGGCTTGTAAACCAAATCGGAA
CGAGAGAAATTTGCAGCAGAGCCGGAGAGGCGTTGTTAGATGCGAAGTCG
CAGTTGATCCCTCCTCCGCTTCCGCCCTCGAGCAGCTCAAGGCCTCTGCC
CCTGACCGATACACGAAGGAAAGGAGCAGCATTGTGGTCATTGGGCTCAG
TGTTCACACTGCACCTGTTGAGATGCGAGAAAAACTTGCCATTCCTGAGG
CTGAATGGCCACGGGCCATCGGAGAGTTGTGTAACTTAAATCATATAGAG
GAGGCCGCTGTCCTTAGCACCTGCAACAGAATGGAGATATATGTTGTAGC
TCTCTCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCAAAGA
CAAGTGGGATCCCCGTTGCAGAGCTTTGTGAGCACCGGTTTTTGCTGTAT
AACAAAGATGCTACACAGCATCTCTTTGAAGTATCAGCGGGTCTTG
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