CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCG3_MOUSE (ATP-binding cassette sub-family G member 3 OS=Mus musculus GN=Abcg3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 70/195 (35.90%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  207 LQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYG-TSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQ 788
            L  ++G  +PG L AIMGP    +S LLD LA R       +G+ILING+ R   +  TS YV Q+D ++ T+TV + + +SA L+LP T+T+ +K+ R    ++ + L    N        K  S   ++R SI +E++T   +LFLD+PT+GLD   +  V+  + ++ ++      RTII SI+QP   +F+
Sbjct:   64 LSNISGIMKPG-LNAIMGPQDGSRSLLLDVLAARRDPRGL-SGDILINGKPRPANFKCTSGYVPQNDVVLGTVTVRDNLEFSAALRLPVTITRDEKRRRINEVLELLHLNKEQN-------IKPRSKELRKRTSIAMELVTEHPILFLDDPTTGLDLRTTTDVILVLRRMSKK-----GRTIIFSINQPQYSIFK 244          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.999e-18
Identity = 74/242 (30.58%), Postives = 121/242 (50.00%), Query Frame = 3
Query:   72 ESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS-AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            ++  +NK    S  ++ +D   + L W+DL  TV    K   + IL  ++GY +   L A++G +  GKS LL  L+ R G      GEI ++G K          YV ++   I+  TV E +   A L+     +  ++    E  I  +GL +  +  +G  G KGLS   KR +SI +E+  RP  +L LDEP +GLDS +++ ++  + KL +        +I+ S+ QPSS + +L
Sbjct:  736 QTEPDNKKVDVSTTLSTNDN--LVLCWRDLNFTVVT--KTSKKQILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQR-GIAGSVEGEITLSGLKNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGLGEVADFIVGDMG-KGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLAR-----SGLSILCSVSQPSSRILEL 966          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: Y1508_METJA (Uncharacterized ABC transporter ATP-binding protein MJ1508 OS=Methanocaldococcus jannaschii GN=MJ1508 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 69/205 (33.66%), Postives = 102/205 (49.76%), Query Frame = 3
Query:  180 GQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA---------LAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            G+ +     L+ +      GE + IMGPSGCGKSTLL+ LA     +T   GE+   GR+ +              S ++ Q   LI TLT  E V     L   D   K  +++RA+  ++ +GL D +N          LSGGQ++RV+I   +   PK++F DEPT  LDS +   VMS +  L+++  G+   TII   H+
Sbjct:   12 GKGEAKTIALKNINLKIEEGEFVMIMGPSGCGKSTLLNILALL---DTPTKGEVYYKGRRTSSMSENERAIFRRKISGFIFQQFHLIKTLTALENVELPMML---DERDKSYRRKRAKKLLEMVGLGDRLNHY-----PHQLSGGQQQRVAIARALANNPKIIFADEPTGNLDSKSGMAVMSILKGLNEK--GI---TIIMVTHE 200          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: BCEA_BACSU (Bacitracin export ATP-binding protein bceA OS=Bacillus subtilis GN=bceA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 67/209 (32.06%), Postives = 109/209 (52.15%), Query Frame = 3
Query:  180 GQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING------RKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKE---RAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            G K   + +L+G+  +   GE ++IMG SG GK+TLL+ L+     +    G I ING      +++ LA        ++ QD  L+ TLTV E +       LP ++TKL KKE   + E   KE+G+ +  +          +SGGQK+R S     +  P ++F DEPT  LDS ++  +++++++L+Q+ +     TII   H P
Sbjct:   14 GNKLNKQEVLKGIDIHIEKGEFVSIMGASGSGKTTLLNVLSS---IDQVSHGTIHINGNDMTAMKEKQLAEFRKQHLGFIFQDYNLLDTLTVKENIL------LPLSITKLSKKEANRKFEEVAKELGIYELRDKY-----PNEISGGQKQRTSAGRAFIHDPSIIFADEPTGALDSKSASDLLNKLSQLNQKRNA----TIIMVTHDP 204          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YBD4_ENCCU (ABC transporter-like protein ECU11_1340 OS=Encephalitozoon cuniculi GN=ECU11_1340 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 68/227 (29.96%), Postives = 116/227 (51.10%), Query Frame = 3
Query:  144 LTWQDLWVTVPDGQKKGNRS---ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKR---ALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNT-RIGGWGAKGLSGGQKRRVSIC---IEMLT---RPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVF 785
            L  + + + VP+     N     ++ GLT   + G + A MG SG GK+T L+ +AG + S +R  G IL++G++R      Y   AY  Q   +I  LTV E VYY     LP+     + KER    + E+ L++ +N   I     K +SGG+++R ++     +ML      K++ LDEPTS LD+  +  +   +    +R + +    ++ ++HQP +E++
Sbjct:    6 LQLEGVTLDVPNQNLSSNEKYARLINGLTADFKSGNVYAFMGTSGSGKTTTLETIAGLVPSGSRTGGRILVDGQERNPDEFPY-EFAYGDQLGYIIDELTVEEFVYYYVVSSLPE-----ESKERVREKMDEV-LENLLNIGHIRHNKMKNISGGEQKRANLARTFTKMLLLEGELKVVLLDEPTSELDAGLALKLGEFLRDYARRSNSI----VLVTVHQPGAELY 221          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: TAUB_ECO57 (Taurine import ATP-binding protein tauB OS=Escherichia coli O157:H7 GN=tauB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 59/176 (33.52%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            G + +L+ +      GELL ++GPSGCGK+TLL+ +AG +     Q G I + G++          V Q++ L+    V + V +  QL     + K+Q+ E A   +K++GL+ A    I  W    LSGGQ++RV I   +   P+LL LDEP   LD+     + + + KL Q
Sbjct:   12 GGKPVLEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GIEKMQRLEIAHQMLKKVGLEGAEKRYI--W---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQ 176          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNC2_PSESM (Phosphonates import ATP-binding protein phnC 2 OS=Pseudomonas syringae pv. tomato GN=phnC2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 62/207 (29.95%), Postives = 105/207 (50.72%), Query Frame = 3
Query:  195 NRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILI-----------NGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKL-----QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            N+S L  L    +PGE++A++G SG GKSTLL  LAG    +    G++ +           NG+ R L      Y+ Q   L+  L+V + V      ++P     L     ++K+RA + +  +GL D    R     A  LSGGQ++RV+I   +  R +++  DEP + LD  ++  VM  +A ++++D     +T++ ++HQ
Sbjct:   16 NKSALLDLALSIQPGEMVALIGASGSGKSTLLRHLAGLACCDRSNGGQVQVLGREVQSSGRLNGQVRRLR-ADIGYIFQQFNLVNRLSVMDNVLIGCLGRMPRWRGSLGLFNREEKQRAMVALDRVGLADLAAQR-----ASTLSGGQQQRVAIARALTQRAEVILADEPIASLDPESARRVMEILADINRQD----GKTVVVTLHQ 212          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: TAUB_SHIBS (Taurine import ATP-binding protein tauB OS=Shigella boydii serotype 4 (strain Sb227) GN=tauB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            G +  L+ +      GELL ++GPSGCGK+TLL+ +AG +     Q G I + G++          V Q++ L+    V + V +  QL     + K+Q+ E A   +K++GL+ A    I  W    LSGGQ++RV I   +   P+LL LDEP   LD+     + + + KL Q
Sbjct:   12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GIEKMQRLEIAHQVLKKVGLEGAEKRYI--W---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQ 176          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: TAUB_SHISS (Taurine import ATP-binding protein tauB OS=Shigella sonnei (strain Ss046) GN=tauB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            G +  L+ +      GELL ++GPSGCGK+TLL+ +AG +     Q G I + G++          V Q++ L+    V + V +  QL     + K+Q+ E A   +K++GL+ A    I  W    LSGGQ++RV I   +   P+LL LDEP   LD+     + + + KL Q
Sbjct:   12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GIEKMQRLEIAHQMLKKVGLEGAEKRYI--W---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQ 176          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: TAUB_ECOLI (Taurine import ATP-binding protein tauB OS=Escherichia coli (strain K12) GN=tauB PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            G +  L+ +      GELL ++GPSGCGK+TLL+ +AG +     Q G I + G++          V Q++ L+    V + V +  QL     + K+Q+ E A   +K++GL+ A    I  W    LSGGQ++RV I   +   P+LL LDEP   LD+     + + + KL Q
Sbjct:   12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GIEKMQRLEIAHQMLKKVGLEGAEKRYI--W---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQ 176          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCG3_MOUSE5.839e-2235.90ATP-binding cassette sub-family G member 3 OS=Mus ... [more]
PDR1_SCHPO2.999e-1830.58ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
Y1508_METJA4.330e-1733.66Uncharacterized ABC transporter ATP-binding protei... [more]
BCEA_BACSU7.386e-1732.06Bacitracin export ATP-binding protein bceA OS=Baci... [more]
YBD4_ENCCU2.807e-1629.96ABC transporter-like protein ECU11_1340 OS=Encepha... [more]
TAUB_ECO572.807e-1633.52Taurine import ATP-binding protein tauB OS=Escheri... [more]
PHNC2_PSESM4.787e-1629.95Phosphonates import ATP-binding protein phnC 2 OS=... [more]
TAUB_SHIBS6.252e-1633.52Taurine import ATP-binding protein tauB OS=Shigell... [more]
TAUB_SHISS8.166e-1633.52Taurine import ATP-binding protein tauB OS=Shigell... [more]
TAUB_ECOLI8.166e-1633.52Taurine import ATP-binding protein tauB OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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