CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: UGPC2_RHIEC (sn-glycerol-3-phosphate import ATP-binding protein ugpC 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ugpC2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 3
Query:  165 VTVPDGQKK-GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            +++ D +K  G   ++ G+    + GE + I+GPSGCGKSTLL  +A   G      GEI I+GR   +        A V Q+ AL   +TV+E + Y+ ++     + K ++  R     K + L+  ++ R        LSGGQ++RV++   M+  PK+   DEP S LD+     + + I +L +R
Sbjct:    4 ISIRDVKKSYGKHPVVHGVDLEIQSGEFIVILGPSGCGKSTLLRMIA---GLEEITGGEIAIDGRVVNQMEPRERGCAMVFQNYALYPHMTVAENIGYALKVA---GVAKTERSRRIAEVAKALSLEPFLDRR-----PAALSGGQRQRVAMGRAMIREPKVFLFDEPLSNLDAKLRIAMRAEIRRLHRR 182          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNC2_PSE14 (Phosphonates import ATP-binding protein phnC 2 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=phnC2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 61/207 (29.47%), Postives = 103/207 (49.76%), Query Frame = 3
Query:  195 NRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-----------RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKL-----QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            ++S L  L    +PGE++A++G SG GKSTLL  LAG    +    G++ + GR+           R L      Y+ Q   L+  L+V + V      ++P     L     ++K+RA   +  +GL D    R     A  LSGGQ++RV+I   +  R +++  DEP + LD  ++  VM  +A +++ D     +T++ ++HQ
Sbjct:   16 HKSALVDLALSIQPGEMVALIGASGSGKSTLLRHLAGLACCDRSNGGQVQVLGREVQSSGRLNSQVRRLR-ADIGYIFQQFNLVNRLSVLDNVLLGCLGRMPRWRGSLALFNREEKQRAMAALDRVGLADLATQR-----ASTLSGGQQQRVAIARALTQRAEVILADEPIASLDPESARRVMEILADINRSD----GKTVVVTLHQ 212          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MACB_MARAV (Macrolide export ATP-binding/permease protein macB OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=macB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA---------LAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            +L+G+     PGE +AIMGPSG GKSTL++ L G L   +  AG+   NGR  +         L      +V Q   L+  +T  E V   A   +   M   ++  RAE  +  +GL + ++ R        LSGGQ++RVSI   ++   +L+F DEPT  LDS +S  V+  +  L ++ H     TII   H P
Sbjct:   25 VLKGIDLKIWPGEFVAIMGPSGSGKSTLMNIL-GCLDQPS--AGQYRFNGRDVSALDRDELARLRRDAFGFVFQSYNLLPGMTARENVEIPA---IYAGMAPAERHARAERLLTGLGLGERLSHR-----PAQLSGGQQQRVSIARALMNGGQLIFADEPTGALDSKSSQEVIRLLTDLSRQGH-----TIILITHDP 206          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YXDL_BACSU (ABC transporter ATP-binding protein yxdL OS=Bacillus subtilis GN=yxdL PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 61/191 (31.94%), Postives = 98/191 (51.31%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING------RKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQ--LPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            GE  A+MGPSG GK+TLL+ ++     +   +G+ILING      ++  LA+       +V QD  L+ TLT+ E +     L+   P  M     +E+      ++G+++ +N R        +SGGQ++R +I   ++ +P L+  DEPT  LDS A+  VM  +  L++ DH     T +   H P S
Sbjct:   33 GEFTAVMGPSGSGKTTLLNIIST---IDRPDSGDILINGENPHRLKRTKLAHFRRKQLGFVFQDFNLLDTLTIGENIMLPLTLEKEAPSVM-----EEKLHGIAAKLGIENLLNKR-----TFEVSGGQRQRAAIARAVIHKPSLILADEPTGNLDSKATKDVMETLQSLNRDDH----VTALMVTHDPVS 206          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB13I_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 68/204 (33.33%), Postives = 99/204 (48.53%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA-------LAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEML-------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDH-GVGSRTIIAS 758
            G + IL+G++   R GE + ++GPSG GKST+L  +AG L  +    GE+ I G+KRA       ++      V Q  AL  +L+V E V +   L     M++ Q  E    T+  +GL+   N          LSGG K+RV++   ++         P++L  DEPT+GLD  AS  V   I  +   D   VG    IAS
Sbjct:   95 GEKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPD---KGEVYIRGKKRAGLISDEEISGLRIGLVFQSAALFDSLSVRENVGF--LLYERSKMSENQISELVTQTLAAVGLKGVENRL-----PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTDEDAVGKPGKIAS 288          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_RALSO (Aliphatic sulfonates import ATP-binding protein ssuB OS=Ralstonia solanacearum GN=ssuB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            ++ G R +L G+     PGE +AI+G SGCGKSTLL  +AG  G +    G +  +G      +  +  + QD  L+    V + V     L LP T      + +A   + ++GL +    R G W A+ LSGGQ++RV++   ++ RP+LL LDEP   LD+     + + I  L QR
Sbjct:   28 KRYGEREVLYGIDLEIAPGEFVAIVGRSGCGKSTLLRLIAGLEGID---GGSLHRDGAAGGGLHDDARVMFQDARLLPWKRVLDNV----ALGLPRT-----HRAQAAEVLAQVGLAE----RAGEWPAR-LSGGQRQRVALARALVHRPRLLLLDEPLGALDALTRIDMQNLIEGLWQR 190          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MDR2_MOUSE (Multidrug resistance protein 2 OS=Mus musculus GN=Abcb4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 79/245 (32.24%), Postives = 123/245 (50.20%), Query Frame = 3
Query:   60 FEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK------RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            F+++++  N K  + S   ++ D     L + D+  + P    + N  IL+GL    + G+ +A++G SGCGKST +  L  RL   T   G+I I+G+       R L       V+Q+  L +T T++E + Y       D + K  K+  A   I  M L    +T +G  GA+ LSGGQK+R++I   ++  PK+L LDE TS LD+ +   V    A LD+   G   RT I   H+ S+
Sbjct:  365 FDIIDN--NPKIDSFSERGHKPDNIKGNLEFSDVHFSYPS---RANIKILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQ-RLYDPTE--GKISIDGQDIRNFNVRCLRE-IIGVVSQEPVLFST-TIAENIRYGRGNVTMDEIEKAVKEANAYDFI--MKLPQKFDTLVGDRGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQ---AALDKAREG---RTTIVIAHRLST 590          

HSP 2 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 56/205 (27.32%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  189 KGNRSILQGLTGYARPGELLAIMGPSGCGKSTLL-------DALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYY--SAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            + N  +LQGL+   + G+ LA++G SGCGKST++       D +AG +  + ++A ++ +   +  L       +   + ++   +++E + Y  ++++   D + +  K+      I+   L    NTR+G  G + LSGGQK+R++I   ++ +P++L LDE TS LD+ +   V   + K  +       RT I   H+ S+
Sbjct: 1043 RANVPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVLLDGQEAKKLNVQWLRAQLG------IVSQEPILFDCSIAENIAYGDNSRVVPHDEIVRAAKEANIHPFIET--LPQKYNTRVGDKGTQ-LSGGQKQRIAIARALIRQPRVLLLDEATSALDTESEKVVQEALDKARE------GRTCIVIAHRLST 1232          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LOLD1_RHORT (Lipoprotein-releasing system ATP-binding protein lolD 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=lolD1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 69/206 (33.50%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  198 RSILQGLTGY---ARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING---------RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKE---RAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            R +L  LTG      PGE++A++GPSG GKSTLL  + G L   T  AGE+ I G         R+  L      +V Q   L+   + +E +       +P  +  + +K    RA   + +MGL +  + R G      LSGG+++RV+IC  +  RPKLL  DEPT  LD   +  V   +  L +   G G   +IA+ H P
Sbjct:   19 REVLNVLTGADLAVNPGEIVALVGPSGAGKSTLLQ-ICGLLEKPT--AGEVRIGGISCGQLSEDRRTLLRRDHLGFVYQYHHLLPEFSAAENIV------VPQMIAGIGRKPALARAAELLAKMGLSERQDHRPGQ-----LSGGEQQRVAICRALANRPKLLLADEPTGNLDPNTAERVFQALLDLVR---GEGLAALIAT-HNP 206          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: FBPC_BRUME (Fe(3+) ions import ATP-binding protein fbpC OS=Brucella melitensis GN=fbpC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 64/186 (34.41%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAK---GLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            +K GN + L  L+    PG L+ ++G SGCGK+T L  LAG        +G ILI G+            + V Q  AL   +T  E V Y  +        K + +ERAE  +K +GL        GG G +    LSGGQ++RV++   ++  P++L LDEP S LD+     V + I +L QR
Sbjct:   16 KKFGNFTALPNLSLTVEPGTLVTLLGLSGCGKTTTLRLLAGL---EHPTSGRILIGGKDVTNLPANERDVSMVFQSYALFPHMTSLENVAYGLE---SSGFKKNEARERAEEGLKLVGL--------GGMGHRLPAELSGGQQQRVAVARALVLEPQVLLLDEPLSNLDARLRRRVRTEIRELQQR 187          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YXLF_BACSU (Uncharacterized ABC transporter ATP-binding protein yxlF OS=Bacillus subtilis GN=yxlF PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 54/192 (28.12%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  207 LQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEV 782
            ++ ++ +    E +A++GP+G GK+T L  LAG L   +   G I + G K+ L      Y+ Q  A  + +T +E + ++ +L     ++K + +E+    ++ +GL +A + RIGG+     SGG K+R+ +   +L +PK L LDEP S LD    + V+  + +L +    + S  ++    Q   +V
Sbjct:   17 VKNVSFHVNENECVALLGPNGAGKTTTLQMLAGLLSPTS---GTIKLLGEKK-LDRRLIGYLPQYPAFYSWMTANEFLTFAGRLS---GLSKRKCQEKIGEMLEFVGLHEAAHKRIGGY-----SGGMKQRLGLAQALLHKPKFLILDEPVSALDPTGRFEVLDMMRELKKHMAVLFSTHVLHDAEQVCDQV 196          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UGPC2_RHIEC6.913e-1531.05sn-glycerol-3-phosphate import ATP-binding protein... [more]
PHNC2_PSE146.913e-1529.47Phosphonates import ATP-binding protein phnC 2 OS=... [more]
MACB_MARAV6.913e-1533.84Macrolide export ATP-binding/permease protein macB... [more]
YXDL_BACSU9.029e-1531.94ABC transporter ATP-binding protein yxdL OS=Bacill... [more]
AB13I_ARATH1.179e-1433.33Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplast... [more]
SSUB_RALSO1.540e-1433.89Aliphatic sulfonates import ATP-binding protein ss... [more]
MDR2_MOUSE1.540e-1432.24Multidrug resistance protein 2 OS=Mus musculus GN=... [more]
LOLD1_RHORT2.011e-1433.50Lipoprotein-releasing system ATP-binding protein l... [more]
FBPC_BRUME2.011e-1434.41Fe(3+) ions import ATP-binding protein fbpC OS=Bru... [more]
YXLF_BACSU2.627e-1428.13Uncharacterized ABC transporter ATP-binding protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
back to top