CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: UGPC_BORA1 (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Bordetella avium (strain 197N) GN=ugpC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 58/182 (31.87%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDH 728
            GN  ++ G+    + GE + I+GPSGCGKSTL+  +A   G  T  +GEILI+ +       A    A V Q+ AL   ++V E + Y  +++    + K + ++R E   + + L   ++ R      + LSGGQ++RV++   ++  PK+   DEP S LD+     +   I KL +R H
Sbjct:   15 GNVPVIHGIDMEIKDGEFIVIVGPSGCGKSTLMRMVA---GLETVTSGEILIDDKPVNDLEPAERDIAMVFQNYALYPHMSVFENMAYGLKIR---KVPKAEIQKRVEEAAQILELGKLLDRR-----PRQLSGGQRQRVAMGRAIVREPKVFLFDEPLSNLDAKLRVAMRLEILKLHRRLH 185          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: UGPC1_RHIL3 (sn-glycerol-3-phosphate import ATP-binding protein ugpC 1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ugpC1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 59/186 (31.72%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  180 GQKK--GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            G KK  G   ++ G+    + GE + I+GPSGCGKSTLL  +A   G      GEI I+GR   +        A V Q+ AL   ++V+E + Y+ ++     ++K +++ R     K + L+  +  R        LSGGQ++RV++   M+  PK+   DEP S LD+     + + I +L +R
Sbjct:    8 GVKKNYGKTPVVHGVDLDIQSGEFIVILGPSGCGKSTLLRMIA---GLEEITGGEIAIDGRVVNQLEPRERGCAMVFQNYALYPHMSVAENIGYALKVA---GVSKAERQRRIGEVAKALSLEPFLERR-----PAALSGGQRQRVAMGRAMIREPKVFLFDEPLSNLDAKLRIAMRAEIRRLHRR 182          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 73/246 (29.67%), Postives = 119/246 (48.37%), Query Frame = 3
Query:   60 FEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKST-------LLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            F+++++  N K  + S   ++ D     L + D+  + P    + N  IL+GL    + G+ +A++G SGCGKST       L D   G +  + +      +N  +  +       V+Q+  L +T T++E + Y       D + K  K+  A   I  M L    +T +G  GA+ LSGGQK+R++I   ++  PK+L LDE TS LD+ +   V    A LD+   G   RT I   H+ S+
Sbjct:  368 FDIIDN--NPKIDSFSERGHKPDSIKGNLEFNDVHFSYPS---RANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGV-----VSQEPVLFST-TIAENICYGRGNVTMDEIKKAVKEANAYEFI--MKLPQKFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQ---AALDKAREG---RTTIVIAHRLST 593          

HSP 2 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 59/209 (28.23%), Postives = 104/209 (49.76%), Query Frame = 3
Query:  189 KGNRSILQGLTGYARPGELLAIMGPSGCGKSTLL-------DALAGRLGSNTRQAGEILINGR--KRALAYGTSAY--VTQDDALITTLTVSEAVYY--SAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            + N  +LQGL+   + G+ LA++G SGCGKST++       D LAG +  +    G  L++G+  K+       A   +   + ++   +++E + Y  ++++   D +    K       I+   L     TR+G  G + LSGGQK+R++I   ++ +P++L LDE TS LD+ +   V   + K  +       RT I   H+ S+
Sbjct: 1046 RANVPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDF---GFQLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPFIET--LPHKYETRVGDKGTQ-LSGGQKQRIAIARALIRQPQILLLDEATSALDTESEKVVQEALDKARE------GRTCIVIAHRLST 1242          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCGK_DICDI (ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSA----YVTQDDALITTLTVSEAV-YYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            GN  ++  L    + G +  ++G SG GK+T+L  + GRL      +GE+L+ G++     G       +  Q+ AL   LT+   + ++S   Q+P    + +K E     IK + L    +  +G      LSGGQK+RVS+ + +L  PKLL LDEPT G+D   +  + S +  L   + GV   TII + H
Sbjct:   25 GNTKVIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRL---IPDSGEVLVFGKRPHDIGGVPGSICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKKNE----IIKLLDLPQINSRSVGL-----LSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSL--ANSGV---TIIITTH 203          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: Y2641_BACAN (Putative ABC transporter ATP-binding protein BA_2641/GBAA_2641/BAS2461 OS=Bacillus anthracis GN=BA_2641 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 72/237 (30.38%), Postives = 110/237 (46.41%), Query Frame = 3
Query:   81 SNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKK--------------GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------RKRALAYGTSAYVTQD-DALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            SNN       N++++   GV   W +      D   K                +  L+ +      GE++A++G +G GKSTL  +L   +G N  +   ILI+G        RKR       +YV Q+ + +IT  TV E V ++ +L+    ++K + K RAE  +K  GL    N     W  + LS GQK+R++I   +   PKL+ LDEPT+G D       MS I KL ++
Sbjct:  260 SNNDVIYPLENLHKESISGVIKEWMEKKAFCKDTPTKKELLKVENLSFSYPNKQKALENVNLSIYEGEIVALLGHNGAGKSTLAHSL---IGINKTKNSRILIDGVNINSWSIRKRGEII---SYVMQNPNHMITQSTVIEEVSFTLKLK---KVSKEEIKFRAEEALKICGLYPFRN-----WPIQALSYGQKKRLTIASVLTANPKLIILDEPTAGQDYYHYKQFMSFIRKLAKK 482          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: TAUB_ROSDO (Taurine import ATP-binding protein tauB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=tauB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 51/169 (30.18%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  207 LQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            LQ ++   + GELL+++GPSGCGK+TLL+ +AG L      +GE+++NG +          V Q  AL   ++V E V +   ++      K+ K +  +  +  +GLQD     +       LSGG ++RV++   +   P ++ +DEP   LD+     + S + KL
Sbjct:   24 LQDVSLDLKAGELLSVLGPSGCGKTTLLNIVAGFLAPT---SGELILNGHRITGPDAERGMVFQQGALFEWMSVRENVAFGPSMK---GTPKVDKDKTVDHLLDVVGLQDFKEKAV-----YELSGGMQQRVALARCLANDPDVILMDEPLGALDALTREKMQSLVLKL 181          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB2_BACSK (Aliphatic sulfonates import ATP-binding protein ssuB 2 OS=Bacillus clausii (strain KSM-K16) GN=ssuB2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            G +++LQG+      GE +A++G SGCGKSTLL  +A   G  T  +GE+  NG +       +  + QD  L+    V   V    +L+        + + +A   +K++GL    N     W A  LSGGQK+RV++   + + PKLL LDEP   LD+     +   + +L
Sbjct:   21 GKKNVLQGIDATIHGGEFVAVVGKSGCGKSTLLRHVA---GLETATSGEVRQNGERIDGINQQACLMFQDSRLLPWQNVLTNVGVGLRLE-------GEWQRQAAALLKDVGLDGRGN----DWPAV-LSGGQKQRVALARALASGPKLLLLDEPLGALDALTRMEMQQLVERL 179          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_PSEAB (Spermidine/putrescine import ATP-binding protein potA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=potA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSA---YVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 734
            GE   ++GPSGCGK+TLL  LAG    +   +GEI +NG+  A           V Q  AL   ++V++ + +  ++     + K +   R E  +K++ L D      GG     LSGGQ++RV+I   ++ RP+LL LDEP S LD+     +   +  L Q+D G+
Sbjct:   31 GEFFTLLGPSGCGKTTLLRMLAG---FDQPDSGEIRLNGQDLAGVEPEKRPVHTVFQSYALFPHMSVAQNIAFPLKMA---GVAKSEIDARVEQALKDVRLADK-----GGRMPTQLSGGQRQRVAIARALVNRPRLLLLDEPLSALDAKLREEMQIELINL-QKDVGI 187          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA2_PSEAE (Spermidine/putrescine import ATP-binding protein potA 2 OS=Pseudomonas aeruginosa GN=potA2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSA---YVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 734
            GE   ++GPSGCGK+TLL  LAG    +   +GEI +NG+  A           V Q  AL   ++V++ + +  ++     + K +   R E  +K++ L D      GG     LSGGQ++RV+I   ++ RP+LL LDEP S LD+     +   +  L Q+D G+
Sbjct:   31 GEFFTLLGPSGCGKTTLLRMLAG---FDQPDSGEIRLNGQDLAGVEPEKRPVHTVFQSYALFPHMSVAQNIAFPLKMA---GVAKSEIDARVEQALKDVRLADK-----GGRMPTQLSGGQRQRVAIARALVNRPRLLLLDEPLSALDAKLREEMQIELINL-QKDVGI 187          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNT_SALTI (Putative 2-aminoethylphosphonate import ATP-binding protein phnT OS=Salmonella typhi GN=phnT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 63/178 (35.39%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR--------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            +L+ L+    PGE+LA++GPSG GK+T+L A+AG +       G ILI           KR LA      V Q+ AL   L V + V +  + Q      K    ER    +K +G+ D   TR        LSGGQ++RV+I   +  RP++L LDEP S LD+   + ++  IA+L
Sbjct:   33 VLKPLSLTIEPGEVLALIGPSGSGKTTVLRAVAGFVQP---AGGRILIGDTDVTHLPPYKRGLAM-----VVQNYALFPHLKVEDNVAFGLRAQ---KQPKALINERVTQALKTVGMSDYA-TRY----PHQLSGGQQQRVAIARAIAVRPRVLLLDEPLSALDAQIRHNMVEEIARL 194          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UGPC_BORA15.852e-1431.87sn-glycerol-3-phosphate import ATP-binding protein... [more]
UGPC1_RHIL35.852e-1431.72sn-glycerol-3-phosphate import ATP-binding protein... [more]
MDR3_HUMAN5.852e-1429.67Multidrug resistance protein 3 OS=Homo sapiens GN=... [more]
ABCGK_DICDI5.852e-1431.63ABC transporter G family member 20 OS=Dictyosteliu... [more]
Y2641_BACAN7.643e-1430.38Putative ABC transporter ATP-binding protein BA_26... [more]
TAUB_ROSDO7.643e-1430.18Taurine import ATP-binding protein tauB OS=Roseoba... [more]
SSUB2_BACSK7.643e-1432.18Aliphatic sulfonates import ATP-binding protein ss... [more]
POTA_PSEAB7.643e-1433.73Spermidine/putrescine import ATP-binding protein p... [more]
POTA2_PSEAE7.643e-1433.73Spermidine/putrescine import ATP-binding protein p... [more]
PHNT_SALTI7.643e-1435.39Putative 2-aminoethylphosphonate import ATP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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