CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: BCEA_BACHD (Bacitracin export ATP-binding protein bceA OS=Bacillus halodurans GN=bceA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 60/211 (28.44%), Postives = 104/211 (49.29%), Query Frame = 3
Query:  180 GQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAG--RLGSN---------TRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKK---ERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            G K   + +L+G+      GE ++IMG SG GK+TLL+ L+   +L +          TR   + L   RK+ L +     + Q+  L+ TLTV E +       LP ++TK+ +K   E+ +    E+G+ +  +          +SGGQK+R S     +  P ++F DEPT  LDS ++  ++ ++ +L+++       TI+   H P
Sbjct:   14 GTKLNKQEVLKGIDIRVEKGEFVSIMGASGSGKTTLLNVLSSIDKLSNGSIKIEGSEMTRLKEKELAQFRKKHLGF-----IFQEYNLLDTLTVKENIL------LPLSITKIPRKAADEKFKQVATELGIYEIKDKY-----PNEISGGQKQRASAARAFIHEPSIIFADEPTGALDSKSASDLLGKLQQLNEKLRA----TIVMVTHDP 204          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCA2_DICDI (ABC transporter A family member 2 OS=Dictyostelium discoideum GN=abcA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 64/219 (29.22%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   72 ESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK----RALAYGTSAYVTQDDALITTLTVSEAV-YYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            E S      T  ++V  +D     L +++L    P   K   ++ +   T     G+   ++G +G GK+T +  L G +      +GE+ ING      R  A  ++    Q DALIT L+  E +  Y A   +P+   K    E  E  IK M L    N+  GG+     SGG KR+ S+ I ML  P ++ LDEP++G D+    Y+ + +++L
Sbjct: 1272 EDSDVTAERTRLLSVGPNDEP---LQFRNLHKLFPAVGKAAPKAAVYNSTLSIPKGQTFGLLGLNGAGKTTTIAMLCGDI---VPSSGEVTINGHDLITDRGQALRSNGLCPQFDALITLLSAREQLTLYCAIKGVPEDKVK----EVVEAFIKMMDLGAIANSNTGGY-----SGGNKRKTSLSIAMLGNPSIVSLDEPSTGCDAVVRKYIWNVVSEL 1475          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 61/196 (31.12%), Postives = 97/196 (49.49%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR-----KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            + + L+   R G+  A +GPSG GKST++  +      N+   GEIL++G      K          V+Q+ AL  T T++  +    +    D + +  K   A+  IK   L +  NT++G  G + LSGGQK+R++I   +L  PK+L LDE TS LD+ +   V   +      D+ +  RT I   H+ S+
Sbjct:  388 VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNS---GEILLDGNDIKSLKLKWFREQLGLVSQEPALFAT-TIASNILLGKENANMDQIIEAAKAANADSFIKS--LPNGYNTQVGEGGTQ-LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQAL------DNVMEKRTTIVVAHRLST 570          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_RHOFD (Aliphatic sulfonates import ATP-binding protein ssuB OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=ssuB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDS 674
            G R +L+       PG+ +AI+G SGCGKSTLL  +A   G  T  AG I +N +        +  + QD  L+    + + V     L LP       ++  A   + ++GL D    R   W A+ LSGGQ++RVS+   ++ +P+LL LDEP   LD+
Sbjct:   25 GAREVLRNTQLRVEPGQFIAIVGRSGCGKSTLLRLVA---GLETASAGSITVNDKLLTGLSDDTRIMFQDARLLPWKRIIDNV----ALGLPK-----DRRAEALKVLDQVGLAD----RANDWPAR-LSGGQRQRVSLARALVHKPRLLLLDEPLGALDA 168          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_RALEJ (Aliphatic sulfonates import ATP-binding protein ssuB OS=Ralstonia eutropha (strain JMP134) GN=ssuB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  198 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            R +L  +   A PGE +AI+G SGCGKSTLL  +A   G      G I ++ +           + QD  L+    V E V     L LP      +++E A   + ++GL+D    R   W A+ LSGGQ++RV++   ++  P+LL LDEP   LD+     +   I  L +R
Sbjct:   48 REVLHRIELTAAPGEFVAIVGRSGCGKSTLLRLVA---GLECADEGAITLDAQPARTLQQDIRVMFQDSRLLPWKRVLENV----ALGLP-----RERREEAAAVLAQVGLRD----RADAWPAR-LSGGQRQRVALARSLVHHPRLLLLDEPLGALDALTRIEMQGLIESLWRR 205          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_PSEPU (Aliphatic sulfonates import ATP-binding protein ssuB OS=Pseudomonas putida GN=ssuB PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 63/197 (31.98%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEV 782
            G R +L+G+  +   G+ +AI+G SGCGKSTLL  LA   G +   AG++L        A   +  + QD  L+    V + V                 + RA   ++ +GL D  N     W A  LSGGQK+RV++   ++ +P+LL LDEP   LD+     +   I +L  R HG    T++   H  S  V
Sbjct:   27 GQREVLKGIELHIPAGQFVAIVGRSGCGKSTLLRLLA---GLDQPTAGQLLAGAAPLEQAREETRLMFQDARLLPWKKVIDNVGLGLSGDW---------RPRALEALESVGLADRANE----WPA-ALSGGQKQRVALARALIHQPRLLLLDEPLGALDALTRIEMQQLIERL-WRQHGF---TVLLVTHDVSEAV 202          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_BACCZ (Aliphatic sulfonates import ATP-binding protein ssuB OS=Bacillus cereus (strain ZK / E33L) GN=ssuB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDS 674
            ++ G   +L+ +      G+ + ++GPSGCGKSTLL  +A   G +    GEI+I+G +         ++ Q+  L   LTV E +  +A L L D   K + KE  E+ ++  G + +          K +SGG  +RV+I   +L  P +L LDEP   LD+
Sbjct:   14 KQTGTVQVLENINFQLEKGDFVTVIGPSGCGKSTLLKIIA---GLDNDFEGEIIIDGERITKPSKKQGFIFQEHRLFPWLTVEENI--AADLSLKDKYVKDKVKEWVEI-VRLDGFEKSY--------PKEISGGMSQRVAIARALLRDPNVLLLDEPFGALDA 163          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_LACBA (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=potA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVT---QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            ++  + +IL  +      G+   ++GPSGCGK+T+L  +AG   + T   G+IL  G++          V    QD AL   +TV+E V +   LQ      K +  ER    ++ + L D      G      LSGGQ++R++I   ++ +P++L LDEP S LD+     +   +  L QR
Sbjct:   13 KRYADNTILSNINLTLESGKFYTLLGPSGCGKTTILRTIAGFTDATT---GDILFAGKRINDVPANKRNVNTVFQDYALFPHMTVAENVAFGLTLQ---KRPKSEIAERVNQALRLVQLAD-----YGDRAISALSGGQQQRIAIARAIVMQPQVLLLDEPLSALDAKLRRQMQYELRDLQQR 184          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNC_SHIDS (Phosphonates import ATP-binding protein phnC OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=phnC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 58/195 (29.74%), Postives = 98/195 (50.26%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGR-------------LGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKL-----QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            GE++A++GPSG GKSTLL  L+G              LG   +Q G +  + RK   +   + Y+ Q   L+  L+V E V   A    P   T       ++K+RA   +  +G+    + R+       LSGGQ++RV+I   ++ + K++  DEP + LD  ++  VM  +  ++Q D G+   T++ ++HQ
Sbjct:   30 GEMVALLGPSGSGKSTLLRHLSGLIVGDKKPECRVELLGCTVQQNGRLARDIRK---SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GI---TVVVTLHQ 212          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNC2_SYNJB (Phosphonates import ATP-binding protein phnC 2 OS=Synechococcus sp. GN=phnC2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:  207 LQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKK------ERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ-PSSEVF 785
            L+G+T     G+++A++GPSG GKSTLL  +  RL   T  +G I +NG        R+   A      + Q+ AL+  LTV E V  S QL   +      +K      + A   +  +GL D  + R     A  LSGGQ++RV I   +L  P+LL +DEPT+ LD   S  +M  I +L   + G+   ++I +IH  P +++F
Sbjct:   18 LKGVTLEVPDGQVMALIGPSGAGKSTLLRCI-NRLVEPT--SGSIWLNGIDLTRLNTRELRQARRKIGMIFQEYALVERLTVMENVL-SGQLGYVNFWQSWFRKFPQATIDEAFRLLDRVGLSDFPDKR-----ADALSGGQRQRVGIARALLQNPELLLVDEPTASLDPKTSRQIMRLINEL-ASERGL---SVIINIHDVPLAQMF 212          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BCEA_BACHD1.304e-1328.44Bacitracin export ATP-binding protein bceA OS=Baci... [more]
ABCA2_DICDI1.304e-1329.22ABC transporter A family member 2 OS=Dictyostelium... [more]
AB13B_ARATH1.304e-1331.12ABC transporter B family member 13 OS=Arabidopsis ... [more]
SSUB_RHOFD1.703e-1334.16Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_RALEJ1.703e-1333.14Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_PSEPU1.703e-1331.98Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_BACCZ1.703e-1331.71Aliphatic sulfonates import ATP-binding protein ss... [more]
POTA_LACBA1.703e-1330.05Spermidine/putrescine import ATP-binding protein p... [more]
PHNC_SHIDS1.703e-1329.74Phosphonates import ATP-binding protein phnC OS=Sh... [more]
PHNC2_SYNJB1.703e-1333.65Phosphonates import ATP-binding protein phnC 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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