CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YTLC_BACSU (Uncharacterized ABC transporter ATP-binding protein ytlC OS=Bacillus subtilis GN=ytlC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  228 ARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLD 671
            A  G+ ++ +GPSGCGK+TLL  +AG +  +    G +LI GR+         Y+ Q D L    ++ E V     L++ DT+T+ + K  A   + E GL D           K LSGG ++R ++   +   P LL LDEP S LD
Sbjct:   30 AEKGDFISFLGPSGCGKTTLLSIIAGLIEPS---EGRVLIEGREPNQKEHNIGYMLQQDYLFPWKSIEENVLLG--LKIADTLTE-ESKAAALGLLPEFGLIDVEKKY-----PKELSGGMRQRAALARTLAPNPSLLLLDEPFSALD 166          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YKNY_BACSU (Uncharacterized ABC transporter ATP-binding protein yknY OS=Bacillus subtilis GN=yknY PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 61/187 (32.62%), Postives = 95/187 (50.80%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALA--GRLGSNTRQA-GEILINGRKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLP---DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            GE ++IMGPSG GKST+++ +    R  S T Q  GE + + + + LA   +    +V Q   L+  L   + V      +LP     + K +++ERAE  ++++GL D M           LSGGQK+RV+I   ++  PKL+  DEPT  LD+  S  +M +   L+         TI+   H+P
Sbjct:   31 GEYVSIMGPSGSGKSTIMNIIGCLDRPTSGTYQLDGEDISSYKDKELAAVRNRSIGFVFQQFQLLPRLNAKKNV------ELPMIYSGIGKKERQERAERALEKVGLADRMLHM-----PNELSGGQKQRVAIARAIVNEPKLILADEPTGALDTKTSEAIMDQFTALNAE-----GTTIVLVTHEP 201          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: Y2655_BACCR (Putative ABC transporter ATP-binding protein BC_2655 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=BC_2655 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 70/250 (28.00%), Postives = 110/250 (44.00%), Query Frame = 3
Query:   42 PAISRAFEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKK--------------GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------RKRALAYGTSAYVTQD-DALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            P    A + +   SNN       N+ ++    V   W +  V +    K                 + +L+ +      GE++A++G +G GKSTL  +L   +G N  + G+I + G        RKR       +YV Q+ + +IT  TV E V ++  L      +K + K + E  +K  GL    N     W  + LS GQK+R++I   + T PKL+ LDEPT+G D       MS I  L ++
Sbjct:  247 PIYIEALKRLHFDSNNDVIYPMENLQKEKVSNVIKEWMEKQVILKRNAKNKELLKVENLSFSYPNKQKVLENVNLLIYEGEIVALLGHNGAGKSTLAHSL---IGINKMKNGKIALKGEDISSWSIRKRGEII---SYVMQNPNHMITQPTVFEEVSFTLTLH---NFSKEEIKNKVEGILKICGLYPFRN-----WPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYYHYKQFMSFIKNLAKK 482          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: Y2424_BACHK (Putative ABC transporter ATP-binding protein BT9727_2424 OS=Bacillus thuringiensis subsp. konkukian GN=BT9727_2424 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 62/171 (36.26%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------RKRALAYGTSAYVTQD-DALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            GE++A++G +G GKSTL  +L   +G N  +   ILI+G        RKR        YV Q+ + +IT  TV E V ++ +L+    ++K + K RAE  +K  GL    N     W  + LS GQK+R++I   +   PKL+ LDEPT+G D       MS I KL ++
Sbjct:  326 GEIVALLGHNGAGKSTLAHSL---IGINKTKNSRILIDGVNINSWSIRKRGEII---FYVMQNPNHMITQSTVIEEVSFTLKLK---KVSKEEIKFRAEEALKICGLYPFRN-----WPIQALSYGQKKRLTIASVLTANPKLIILDEPTAGQDYYHYKQFMSFIRKLAKK 482          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_LACSS (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=potA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVT---QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKG---LSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            +K  +  IL+G+      G+   ++GPSGCGK+T+L  +AG   +++   G++L  G++          V    QD AL   L V + V +   L+      K++K +  +  I+ + L      R+GG+  +    LSGGQ++RV+I   +   PK+L LDEP S LD      +   +  L QR
Sbjct:   13 KKYDDNQILKGIDMALEKGKFYTLLGPSGCGKTTILRIIAGFTNASS---GDVLFEGKRMNDLPANKRQVNTVFQDYALFPHLNVFDNVAFGLNLR------KVKKSDVEKKVIEALKL-----VRLGGYEHREISELSGGQQQRVAIARALANEPKVLLLDEPLSALDMKLRKAMQYELRDLQQR 184          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 58/183 (31.69%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  189 KGNRSILQGLTGYARPGELLAIMGPSGCGKSTLL-------DALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKK-ERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            +G R  L+G+      GE++A++GPSG GK+TL+       D   GR+  +    G+I +   +  +     A+V+QD  L    TV+  V Y A+ +    M ++++  + A +T     L + +NT IG  G K LSGGQ++R++I   +     +L LDE TS LDS +   V + +  L
Sbjct:  358 EGTRPALEGIDIRVPAGEVVALVGPSGSGKTTLVNLVPRFFDPTDGRILLDGHAIGDIALRELRNQI-----AFVSQDVVLFND-TVAANVAYGARSEEEIDMARVERALQAAYLTEVVKNLPEGVNTNIGDNGMK-LSGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALEAL 533          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MDR3_MOUSE (Multidrug resistance protein 3 OS=Mus musculus GN=Abcb1a PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 65/198 (32.83%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKST-------LLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            IL+GL    + G+ +A++G SGCGKST       L D L G +  + +    I +   +  +       V+Q+  L  T T++E + Y  +    D + K  K+  A   I  M L    +T +G  GA+ LSGGQK+R++I   ++  PK+L LDE TS LD+ +   V    A LD+   G   RT I   H+ S+
Sbjct:  405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV-----VSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ---AALDKAREG---RTTIVIAHRLST 587          

HSP 2 Score: 75.0998 bits (183), Expect = 4.954e-13
Identity = 53/198 (26.77%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLL-------DALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            +LQGL+   + G+ LA++G SGCGKST++       D +AG +  + ++  ++ +   +  L       +   + ++   +++E + Y    ++      ++  + A +      L D  NTR+G  G + LSGGQK+R++I   ++ +P +L LDE TS LD+ +   V   + K  +       RT I   H+ S+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE------GRTCIVIAHRLST 1232          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: CYDC_ECOLI (ATP-binding/permease protein cydC OS=Escherichia coli (strain K12) GN=cydC PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  132 DGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA----LAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            D V LT +D+  T P+  ++     L+G++     GE +AI+G +GCGKSTLL  L         Q GEIL+N    A     A   +  V      + + T+ + +  ++     + ++++ ++   E  +++ GL   +     G G + LSGG+ RR++I   +L    L+ LDEPT GLD+     ++  +A++
Sbjct:  335 DRVSLTLRDVQFTYPEQSQQA----LKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDP---QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWL-----GEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEM 520          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCA5_DICDI (ABC transporter A family member 5 OS=Dictyostelium discoideum GN=abcA5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 69/220 (31.36%), Postives = 100/220 (45.45%), Query Frame = 3
Query:  129 GDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK----RALAYGTSAYVTQDDALITTLTVSEAV-YYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPS 773
            G G  L ++ L        K  N++ +   T     G+   ++G +G GK+T +  LAG +      +G+I ING      RA A    +   Q DALIT LT  E +  Y A   +PD    L      E  IK M L    N+  GG+     SGG KR+VS+ I ML  P ++ +DE +SG D    Y     I++L +      ++ II + H  S
Sbjct: 1317 GGGDMLQYKGLHKLFIGKGKNPNKNAVYNSTLGIPQGQTFGLLGLNGAGKTTTVSMLAGDI---LPTSGQITINGHDLVTDRAQALRGVSVCPQFDALITLLTAREQLSLYCAIKGVPDDKISLV----VEAFIKMMDLGKIANSNTGGY-----SGGNKRKVSLSIAMLGNPSVVLIDEASSGCDPIIRYRQCQVISELGK------NKVIILTSHSMS 1518          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_MYCCT (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=potA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA-LAYGTSAYVT--QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMT-IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 734
            +L+G++   + GE + ++GPSGCGK+T+L  + G   S    +GEIL   +    +      + T  Q  AL   L V + V +   ++     TK    ER  M  I+++GL+   N +I       LSGGQK+RV+I   ++ +PK+L LDEP + LD      +   + +L Q+D G+
Sbjct:   20 VLKGISFNVKEGEFITLLGPSGCGKTTILKIIGG---SQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIK----KTKKDIIEREVMRQIRQVGLEGYENKKIDE-----LSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRL-QQDIGI 187          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YTLC_BACSU2.904e-1334.46Uncharacterized ABC transporter ATP-binding protei... [more]
YKNY_BACSU2.904e-1332.62Uncharacterized ABC transporter ATP-binding protei... [more]
Y2655_BACCR2.904e-1328.00Putative ABC transporter ATP-binding protein BC_26... [more]
Y2424_BACHK2.904e-1336.26Putative ABC transporter ATP-binding protein BT972... [more]
POTA_LACSS2.904e-1330.11Spermidine/putrescine import ATP-binding protein p... [more]
MSBA_RALEJ2.904e-1331.69Lipid A export ATP-binding/permease protein msbA O... [more]
MDR3_MOUSE2.904e-1332.83Multidrug resistance protein 3 OS=Mus musculus GN=... [more]
CYDC_ECOLI2.904e-1328.28ATP-binding/permease protein cydC OS=Escherichia c... [more]
ABCA5_DICDI2.904e-1331.36ABC transporter A family member 5 OS=Dictyostelium... [more]
POTA_MYCCT3.793e-1332.04Spermidine/putrescine import ATP-binding protein p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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