CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LOLD_ROSDO (Lipoprotein-releasing system ATP-binding protein lolD OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=lolD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 57/189 (30.16%), Postives = 91/189 (48.15%), Query Frame = 3
Query:  201 SILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING---------RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGS 740
            ++L+G+      GE++A++ PSG GKSTLL  +AG L  +    G++LI G         R+ A+      ++ Q   L+     +E +      QL + ++K    ERA   +  +G+      R G      LSGG+++RV+ C  +   PK+L  DEPT  LD   S  V   +  L  RD G+ +
Sbjct:   24 TVLRGVDLRIAKGEVVALVAPSGAGKSTLLH-IAGLL--DEADTGQVLIEGEEMRGLSDARRTAIRRSDVGFIYQFHHLLPEFNAAENIILP---QLANGVSKAAAAERAAGLLSAVGIASRAAHRPGA-----LSGGEQQRVAFCRALANAPKMLLADEPTGNLDPGTSDQVFDALMNL-VRDTGLSA 200          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: HRTA_STAHJ (Putative hemin import ATP-binding protein hrtA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=hrtA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 54/199 (27.14%), Postives = 93/199 (46.73%), Query Frame = 3
Query:  165 VTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR--------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVG 737
            +T   G       +L+ +      GE + + G SG GKSTLL+ L G L  ++   G++L  G         K +L      ++ Q   L+  LTV E +   A+      + + + K++A+  + E+GL   ++          LSGG+K+RV+I    +  PK++  DEPT+ LD+  +  V+  I    Q  + +G
Sbjct:    8 ITKTFGNGDAQTEVLKNINFSVNQGEFIILSGASGSGKSTLLNILGGLLSPSS---GDVLYKGENLFSKEVDKTSLRLNDIGFIFQSSHLVPYLTVREQLMIVAK---EAGIKRKEAKDKAQRLLNEIGLSHRLDVY-----PHLLSGGEKQRVAIMRAFMNEPKIILADEPTASLDADRATSVVQMIKAHVQTKNMIG 195          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: FBPC1_HAEIN (Fe(3+) ions import ATP-binding protein fbpC 1 OS=Haemophilus influenzae GN=fbpC1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 50/180 (27.78%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            G   ++  L    + G ++ ++GPSGCGK+T+L  +AG        +G+I I+G    K ++       V Q  AL   +++ + V Y  ++Q      + Q+ + A   +   G +D    +I        SGGQ++RV++   ++ +PK+L  DEP S LD+     +  +I +L QR
Sbjct:   17 GKAVVIDNLDLTIKRGTMVTLLGPSGCGKTTVLRLVAGL---ENPTSGQIFIDGEDVTKSSIQNRDICIVFQSYALFPHMSIGDNVGYGLKMQGIGKEERAQRVKEALELVDLAGFEDRFVDQI--------SGGQQQRVALARALVLKPKVLLFDEPLSNLDANLRRSMREKIRELQQR 185          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: CYSA_SYNY3 (Sulfate/thiosulfate import ATP-binding protein cysA OS=Synechocystis sp. (strain PCC 6803) GN=cysA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 62/210 (29.52%), Postives = 100/210 (47.62%), Query Frame = 3
Query:  111 NVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA---LAYGTSAYVTQDDALITTLTVSEAVYYSAQLQL-PDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDH 728
            NV++  GD  F   +D+ + VPDG+                   L+A++GPSG GKSTLL A+AG         G+I+ING+      +      +V Q  AL   LT+ + + +  +++  P   TK    ER E  +  + L+      +G      LSGGQ++RV++   +  +P++L LDEP   LD+     + + + KL    H
Sbjct:    7 NVSKQFGD--FTALKDINLEVPDGK-------------------LVALLGPSGSGKSTLLRAIAGL---EEPDQGQIIINGQDATHVDIRKRNIGFVFQHYALFKHLTIRQNIAFGLEIRKHPPAKTK----ERVEELLSLIQLEG-----LGNRYPSQLSGGQRQRVALARALAVQPQVLLLDEPFGALDAKVRKELRAWLRKLHDEVH 183          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: CYSA_RALSO (Sulfate/thiosulfate import ATP-binding protein cysA OS=Ralstonia solanacearum GN=cysA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAK----GLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDS 674
            GN   L  ++   R GEL A++GPSGCGK+TLL  +A   G     AG IL+NG     R +      +V Q  AL   +TV E V +  +++      + Q+   A++  K   L + +      W A+     LSGGQ++R+++   +   P++L LDEP   LD+
Sbjct:   13 GNFVALDDVSLAFRQGELTALLGPSGCGKTTLLRIIA---GLEHADAGTILLNGEDASDRHVRERQVGFVFQHYALFKHMTVFENVAFGLRVK-----PRAQRPSEAQIRAKVKALLELVQL---DWLAERYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDA 169          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_BACCR (Aliphatic sulfonates import ATP-binding protein ssuB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ssuB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDS 674
            ++ G   +L+ +      G+ + ++GPSGCGKSTLL  +A   G +    GE++I+G           ++ Q+  L   LTV E +  +A L L D   K + +E  E+ ++  G + +          K +SGG  +RV+I   +L  P +L LDEP   LD+
Sbjct:   14 KQTGTVQVLENINFQLEEGDFVTVIGPSGCGKSTLLKIVA---GLDNDFEGEVVIDGEPILKTSKKQGFIFQEHRLFPWLTVEENI--AADLSLKDKYVKDKVREWVEI-VRLDGFEKSY--------PKEISGGMSQRVAIARALLRDPNVLLLDEPFGALDA 163          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PSTB_FRASC (Phosphate import ATP-binding protein pstB OS=Frankia sp. (strain CcI3) GN=pstB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 57/172 (33.14%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  234 PGELLAIMGPSGCGKSTLLDAL--AGRLGSNTRQAGEILINGRKRALAYG----------TSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            P  + A +GPSGCGKST+L  L     +    R  G++L++G      YG          T   V Q      T+++ E V   A L+L     K    ER E +++   L + +  R+G  GA GLSGGQ++R+ I   +   P++L +DEP S LD  ++  +   IAKL
Sbjct:   29 PKNVTAFIGPSGCGKSTVLRTLNRMHEVLPGARVEGQVLLDGED---LYGPGMDPVAVRRTVGMVFQRPNPFPTMSIYENVI--AGLKLNGVRKKALLDERVEESLRGANLWEEVKDRLGRPGA-GLSGGQQQRLCIARAIAVEPQVLLMDEPCSALDPISTLAIEDLIAKL 194          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_STRA5 (Spermidine/putrescine import ATP-binding protein potA OS=Streptococcus agalactiae serotype V GN=potA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 57/180 (31.67%), Postives = 96/180 (53.33%), Query Frame = 3
Query:  195 NRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAY----VTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            N  +L+ +      G+   ++G SG GKST+L+ +AG L ++T   G+I ++G KR     T+      V Q+ AL   +TV E V +  +L+    M K + ++R + T+K + L+      I     + LSGGQ++RV+I   ++ +PK++ LDEP S LD      +   + +L QR
Sbjct:   19 NTVVLKDINFELEEGKFYTLLGASGSGKSTILNIIAGLLEAST---GDIYLDG-KRINDVPTNKRDVHTVFQNYALFPHMTVFENVAFPLKLK---KMDKKEIQKRVQETLKMVRLEGFEKRAI-----QKLSGGQRQRVAIARAIINQPKVVLLDEPLSALDLKLRTEMQYELRELQQR 186          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_STRA3 (Spermidine/putrescine import ATP-binding protein potA OS=Streptococcus agalactiae serotype III GN=potA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 57/180 (31.67%), Postives = 96/180 (53.33%), Query Frame = 3
Query:  195 NRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAY----VTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            N  +L+ +      G+   ++G SG GKST+L+ +AG L ++T   G+I ++G KR     T+      V Q+ AL   +TV E V +  +L+    M K + ++R + T+K + L+      I     + LSGGQ++RV+I   ++ +PK++ LDEP S LD      +   + +L QR
Sbjct:   19 NTVVLKDINFELEEGKFYTLLGASGSGKSTILNIIAGLLEAST---GDIYLDG-KRINDVPTNKRDVHTVFQNYALFPHMTVFENVAFPLKLK---KMDKKEIQKRVQETLKMVRLEGFEKRAI-----QKLSGGQRQRVAIARAIINQPKVVLLDEPLSALDLKLRTEMQYELRELQQR 186          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_STRA1 (Spermidine/putrescine import ATP-binding protein potA OS=Streptococcus agalactiae serotype Ia GN=potA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 57/180 (31.67%), Postives = 96/180 (53.33%), Query Frame = 3
Query:  195 NRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAY----VTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            N  +L+ +      G+   ++G SG GKST+L+ +AG L ++T   G+I ++G KR     T+      V Q+ AL   +TV E V +  +L+    M K + ++R + T+K + L+      I     + LSGGQ++RV+I   ++ +PK++ LDEP S LD      +   + +L QR
Sbjct:   19 NTVVLKDINFELEEGKFYTLLGASGSGKSTILNIIAGLLEAST---GDIYLDG-KRINDVPTNKRDVHTVFQNYALFPHMTVFENVAFPLKLK---KMDKKEIQKRVQETLKMVRLEGFEKRAI-----QKLSGGQRQRVAIARAIINQPKVVLLDEPLSALDLKLRTEMQYELRELQQR 186          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LOLD_ROSDO1.441e-1230.16Lipoprotein-releasing system ATP-binding protein l... [more]
HRTA_STAHJ1.441e-1227.14Putative hemin import ATP-binding protein hrtA OS=... [more]
FBPC1_HAEIN1.441e-1227.78Fe(3+) ions import ATP-binding protein fbpC 1 OS=H... [more]
CYSA_SYNY31.441e-1229.52Sulfate/thiosulfate import ATP-binding protein cys... [more]
CYSA_RALSO1.441e-1232.74Sulfate/thiosulfate import ATP-binding protein cys... [more]
SSUB_BACCR1.883e-1230.49Aliphatic sulfonates import ATP-binding protein ss... [more]
PSTB_FRASC1.883e-1233.14Phosphate import ATP-binding protein pstB OS=Frank... [more]
POTA_STRA51.883e-1231.67Spermidine/putrescine import ATP-binding protein p... [more]
POTA_STRA31.883e-1231.67Spermidine/putrescine import ATP-binding protein p... [more]
POTA_STRA11.883e-1231.67Spermidine/putrescine import ATP-binding protein p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
back to top