CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: RBSA2_ECO57 (Ribose import ATP-binding protein rbsA 2 OS=Escherichia coli O157:H7 GN=rbsA2 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 58/202 (28.71%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  207 LQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR-------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            L+G+     PGE+ A+MG +G GKSTL+  LA   G+ T  +GEILI+G+       K AL+ G +  + Q+  L   L+V+E ++  ++L     + + +   +A+  I  +G Q   + ++       L+  ++++V I   +    ++L +DEPT+ L S  ++ +   I +L  RD G+     I  I    +EV++L
Sbjct:   22 LKGVDLTVYPGEIHALMGENGAGKSTLMKVLA---GAYTATSGEILIDGKPFHIRTPKDALSAGIT-LIYQEMQLAPNLSVAENIFLGSELSHGGLVQRKEMLVQAQKVIDRLGAQFNASDKV-----MTLTIAEQQQVEIARALHRNSRILVMDEPTAALSSRETHRLFELIMRL--RDEGMA----IIYISHRMAEVYEL 208          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_NITEU (Spermidine/putrescine import ATP-binding protein potA OS=Nitrosomonas europaea GN=potA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSA---YVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDS 674
            GEL  ++GPSGCGK+TLL  +AG    +   +G+IL++G+  A           V Q  AL   +TV++ V +  ++      T  + K+R E  ++E+ L     +R        LSGGQK+RV+    ++ RP+LL +DEP   LD+
Sbjct:   29 GELFTLLGPSGCGKTTLLRMIAG---FDVPDSGQILLDGQDIANTPPEKRPIHTVFQSYALFPHMTVADNVAFPLKMS---GKTPAEIKKRVEKALEEVQL-----SRFTHRFPHELSGGQKQRVAFARGLINRPRLLLMDEPLGALDA 166          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_METCA (Spermidine/putrescine import ATP-binding protein potA OS=Methylococcus capsulatus GN=potA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVT---QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLD 671
            G+   L+      R GELL ++GPSGCGK+T+L  LA   G     +GEI ++GR  A     +  V    Q  AL   L+V+E V +  +      M KL   E    T +   L+      +GG     LSGGQ++RV++   ++ RP++L LDE  S LD
Sbjct:   37 GSHCALRDFNLELREGELLTLLGPSGCGKTTVLRLLA---GLEIPDSGEIFLDGRTLAGVPPEARNVNTVFQSYALFPHLSVAENVAFGLR------MKKLGSAEIRARTAE--ALRMVRLDGLGGHRPLQLSGGQQQRVALARALVNRPRVLLLDECLSALD 188          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_LEGPL (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila (strain Lens) GN=potA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 58/184 (31.52%), Postives = 90/184 (48.91%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR--------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            GN  IL  ++     GE L ++GPSGCGK+TLL  ++G         GEI ING+        KR +       V Q  AL   L+V E V ++ + +        + ++R    +K + L+      +     K LSGGQ++RV+I   ++ RP++L LDEP S LD      + S + +L +
Sbjct:   16 GNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISG---FEQPTLGEIFINGQCVNQLPPQKRDVHT-----VFQSYALFPHLSVFENVAFALRCKKTPNQ---EIRKRVFDALKLVQLESLAERNV-----KQLSGGQQQRVAIARAIINRPQVLLLDEPLSSLDYRLRKAMQSELKQLQK 183          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_LEGPH (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=potA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 58/184 (31.52%), Postives = 90/184 (48.91%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR--------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            GN  IL  ++     GE L ++GPSGCGK+TLL  ++G         GEI ING+        KR +       V Q  AL   L+V E V ++ + +        + ++R    +K + L+      +     K LSGGQ++RV+I   ++ RP++L LDEP S LD      + S + +L +
Sbjct:   16 GNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISG---FEQPTQGEIFINGQCVNQLPPQKRDVHT-----VFQSYALFPHLSVFENVAFALRCKKTPNQ---EIRKRVFDALKLVQLESLAERNV-----KQLSGGQQQRVAIARAIINRPQVLLLDEPLSSLDYRLRKAMQSELKQLQK 183          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_BACTN (Spermidine/putrescine import ATP-binding protein potA OS=Bacteroides thetaiotaomicron GN=potA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVT---QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLD 671
            G+++ L  +T   + GE + I+GPSGCGK+TLL  +A   G  T   GEI I+G++          V    Q  AL   L V + + +  +L+     T + KK +A   +K +G+ D     +       LSGGQ++RV+I   ++  P++L LDEP + LD
Sbjct:   20 GDKTALDDVTLNVKKGEFVTILGPSGCGKTTLLRLIA---GFQTASEGEIRISGKEITQTPPHKRPVNTVFQKYALFPHLNVYDNIAFGLKLKKTPKQT-IGKKVKA--ALKMVGMTDYEYRDV-----DSLSGGQQQRVAIARAIVNEPEVLLLDEPLAALD 171          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: NODI_RHIGA (Nod factor export ATP-binding protein I OS=Rhizobium galegae GN=nodI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 58/204 (28.43%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  195 NRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR----KRALAYGTSAYVTQDDALITTLTVSEAV-----YYSAQLQ-----LPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            +++++  L+   R GE   ++GP+G GKST+   L   LG  T  AG+I + G     K  LA  +   V+Q D L    TV E +     Y+    +     +P  +   Q + +A++ + +                  LSGG KRR+++   ++  P+LL LDEPT+GLD  A + +  R+  L  R      +TI+ + H
Sbjct:   60 DKTVVDSLSFGVRAGECFGLLGPNGAGKSTITRML---LGMATPSAGKISVLGLPVPGKARLARASIGVVSQFDNLDMEFTVRENLLVFGRYFQMSTRAIEKLIPSLLEFAQLEAKADVRVSD------------------LSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWERLRSLLIR-----GKTILLTTH 237          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MSMX_BACSU (Maltodextrin import ATP-binding protein msmX OS=Bacillus subtilis GN=msmX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  240 ELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKR---ALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            E +  +GPSGCGKST L  +AG         G+  I G++    A      A V Q+ AL   +TV + + +  +L+    M K + K+R E   K +GL++ ++ +      K LSGGQ++RV++   ++   K+  +DEP S LD+     + + I KL QR
Sbjct:   31 EFIVFVGPSGCGKSTTLRMVAGL---EEISKGDFYIEGKRVNDVAPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KMPKPEIKKRVEEAAKILGLEEYLHRK-----PKALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVQMRAEIIKLHQR 183          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: METN_CORGL (Methionine import ATP-binding protein metN OS=Corynebacterium glutamicum GN=metN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 63/202 (31.19%), Postives = 96/202 (47.52%), Query Frame = 3
Query:  186 KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR--------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            K    + L  +T    PGE++ I+G SG GKSTL+  + G L S T  +G +L+NG         K          + Q   L  + T +  V Y  ++     M K  +K R +  ++ +GL D      G    + LSGGQK+RV I   + T P LL  DE TS LD   ++ V+  + K++ R+ G+   TI+   H+
Sbjct:   38 KSAKTTALDNVTLTVEPGEVIGIIGYSGAGKSTLVRLING-LDSPT--SGSLLLNGTDIVGMPESKLRKLRSNIGMIFQQFNLFQSRTAAGNVEYPLEVA---KMDKAARKARVQEMLEFVGLGDK-----GKNYPEQLSGGQKQRVGIARALATNPTLLLADEATSALDPETTHEVLELLRKVN-RELGI---TIVVITHE 224          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MALK_MANSM (Maltose/maltodextrin import ATP-binding protein malK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=malK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 61/200 (30.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:  180 GQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQA--GEILING---RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            G+  G+  I + +      GE +  +GPSGCGKSTLL  +AG     T +   GE L+N     KR +       V Q  AL   L V++ + +  +L     + K ++ +R     + + L   ++ +      K LSGGQ++RV+I   ++++P++  LDEP S LD+A    +   I+KL    H   +RT+I   H
Sbjct:   10 GKSYGDVHISKDINLEINEGEFVVFVGPSGCGKSTLLRMIAGLEDITTGELYIGEKLMNDVEPSKRGIGM-----VFQSYALYPHLDVADNMSFGLKLA---GVKKNERDQRVNQVAEILQLAHLLDRK-----PKALSGGQRQRVAIGRTLVSQPEVFLLDEPLSNLDAALRVQMRVEISKL----HKKLNRTMIYVTH 192          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBSA2_ECO574.194e-1228.71Ribose import ATP-binding protein rbsA 2 OS=Escher... [more]
POTA_NITEU4.194e-1234.23Spermidine/putrescine import ATP-binding protein p... [more]
POTA_METCA4.194e-1234.97Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LEGPL4.194e-1231.52Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LEGPH4.194e-1231.52Spermidine/putrescine import ATP-binding protein p... [more]
POTA_BACTN4.194e-1233.13Spermidine/putrescine import ATP-binding protein p... [more]
NODI_RHIGA4.194e-1228.43Nod factor export ATP-binding protein I OS=Rhizobi... [more]
MSMX_BACSU4.194e-1232.32Maltodextrin import ATP-binding protein msmX OS=Ba... [more]
METN_CORGL4.194e-1231.19Methionine import ATP-binding protein metN OS=Cory... [more]
MALK_MANSM4.194e-1230.50Maltose/maltodextrin import ATP-binding protein ma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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