CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LOLD_HAES1 (Lipoprotein-releasing system ATP-binding protein lolD OS=Haemophilus somnus (strain 129Pt) GN=lolD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS---------AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            +L+ ++   + GEL+AI+G SG GKSTLL  L G    +   +GE+ I+G+    A              +V Q   L+   T  E V       L     K + K+RAE  +  +GL   +  +        LSGG+++RV+I   ++  PKL+  DEPT  LD   +  +   I KL+Q
Sbjct:   23 VLKEVSFSMQEGELIAIVGSSGSGKSTLLHMLGGL---DQPTSGEVFIHGQSLQRATQDELAKLRNQYLGFVYQFHHLMADFTALENVMMP---MLISHKNKTEAKDRAENILSAVGLAKRILHK-----PSALSGGERQRVAIARSLVNNPKLVLADEPTGNLDHKTTESIFELIQKLNQ 192          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: HLYB_PROVU (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Proteus vulgaris GN=hlyB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGT-----SAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            IL  +    + GE++ I+G SG GKSTL   +         + G++LI+G   ALA           V QD+ L+    +         + + + +    K   A   I E  L++  NT +G  GA GLSGGQ++R++I   ++  PK+L  DE TS LD  + + +M  + K+ Q       RT+I   H+ S+
Sbjct:  484 ILNNINLNIKQGEIIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIALADPGMPV-EKVIHAAKLAGAHDFISE--LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICQ------GRTVIIIAHRLST 666          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCBB_HUMAN (Bile salt export pump OS=Homo sapiens GN=ABCB11 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 60/198 (30.30%), Postives = 96/198 (48.48%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLL-------DALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            IL  L    +PGE+ A++GPSG GKST L       D   G +  +      + I   +  +       V Q+  L +T T++E + Y  +    + + +  K+  A   I  M L    +T +G  G + +SGGQK+RV+I   ++  PK+L LD  TS LD+ +   V   ++K+    HG    TII+  H+ S+
Sbjct:  437 ILNDLNMVIKPGEMTALVGPSGAGKSTALQLIQRFYDPCEGMVTVDGHDIRSLNIQWLRDQIGI-----VEQEPVLFST-TIAENIRYGREDATMEDIVQAAKEANAYNFI--MDLPQQFDTLVGEGGGQ-MSGGQKQRVAIARALIRNPKILLLDMATSALDNESEAMVQEVLSKI---QHG---HTIISVAHRLST 619          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 51/172 (29.65%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-----RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 704
            +LQ ++    PG++ A++GPSG GKS+ ++ L         Q G +L++G+          +   + V+Q+  L    ++++ + Y       + + +  +K  A   I E  LQD  +T  G  GA+ LSGGQK+RV++   ++  P +L LDE TS LD+ + Y +   I
Sbjct:  517 VLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY---PLQGGRVLLDGKPIGAYDHKYLHRVISLVSQEPVLFAR-SITDNISYGLPTVPFEMVVEAAQKANAHGFIME--LQDGYSTETGEKGAQ-LSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAI 681          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YDBJ_BACSU (Uncharacterized ABC transporter ATP-binding protein ydbJ OS=Bacillus subtilis GN=ydbJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 52/185 (28.11%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  183 QKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS----AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRD 725
            +K G++ IL+ ++     GE++ ++GP+G GK+TL+  + G L  N+   G + I+G +    +  +      + ++      LT  E + + A       M K    ER +  ++ +GL  A++ ++     K  S G ++R+ I   +L RPKLL LDEPT+GLD A        I +L + +
Sbjct:   13 KKIGSKQILKQISMDVMEGEIIGLLGPNGSGKTTLIRIIVGLLKQNS---GSVTISGFQHDTEFEKAMEAVGAIVENPEFYPYLTGWENLKHFAN------MHKKIADERLDEVVERVGLTSAIHDKV-----KTYSLGMRQRLGIAQAILHRPKLLILDEPTNGLDPAGMKDFRDHIKELAEME 183          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: Y3423_BRUAB (Putative ATP-binding protein BruAb2_1123 OS=Brucella abortus GN=BruAb2_1123 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 50/183 (27.32%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVF 785
            GE + ++GPSGCGKST ++  AG L  +    GEIL+  +           + Q  AL   LTV + V +   +     M++++++E ++  +  +GL D  +        K LSGG K+R +I       P++L +DEP + LD+    ++  ++     R+     RT++   H     V+
Sbjct:   30 GEFVTVVGPSGCGKSTAMNIAAGLLQPS---GGEILVGDKPVTGPGPERGVIFQQYALFPWLTVRQNVEFGLSVA---GMSRVKRREISDHYLSLVGLTDFADAL-----PKALSGGMKQRCAIARAYAAAPEILLMDEPFAALDALTRVHMQDQLLDAWSRER----RTVMFITHDVDEAVY 197          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: UGPC_VIBCH (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Vibrio cholerae GN=ugpC PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 59/171 (34.50%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK---RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGS 740
            GE + ++GPSGCGKS++L ++AG L S T  +GEI + GR+      A    A V Q+ AL   ++V + + Y  + +  D  T   K  +   T+K     D    +        LSGGQ++RV++   ++  P+L   DEP S LD+A   ++   I KL QR+ GV S
Sbjct:   28 GEFIVLVGPSGCGKSSILRSIAG-LESIT--SGEIHLAGRRVDNEKPANRDIAMVFQNYALYPHMSVYDNLAYGLKNRGVDKQTIAAKIAKVAKTLKIEEYLDRKPAK--------LSGGQRQRVAMGRAIVRDPQLFLFDEPLSNLDAALRAHMRLEIKKL-QRELGVTS 186          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: UGPC_PARDP (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Paracoccus denitrificans (strain Pd 1222) GN=ugpC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 57/183 (31.15%), Postives = 98/183 (53.55%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAG--RLGSNTRQAGEILING---RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQL-QLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            GN+ ++ G+T     GE + I+GPSGCGKSTLL  +AG   + + T + G  ++N    R+R +     A V Q+ AL   ++V E + Y  ++ +LP T  + +  + A M    + L+  ++ +      + LSGGQ++RV++   ++  P  L LDEP S LD+     +  +I ++  R
Sbjct:   15 GNQ-VIHGITMEIADGEFVVIVGPSGCGKSTLLRMVAGLEAISAGTVEIGGKVVNDLEPRQRDI-----AMVFQNYALYPHMSVRENMAYGLKIAKLPKTEIEARVAKAATM----LELEPYLDRK-----PRALSGGQRQRVAMGRALVREPAALLLDEPLSNLDAKLRVQMRLQIKEMHLR 182          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: THIQ_HAEI8 (Thiamine import ATP-binding protein thiQ OS=Haemophilus influenzae (strain 86-028NP) GN=thiQ PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  231 RPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK--RALAYGTS-AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL-DQRDHGVGSRTIIASIHQPS 773
            + GE +AI+G SG GKSTLL+ +AG         GEI +N +   R+  Y    + + Q++ L   LTV + +    +  L  T  + +K E+A  ++   GL D +           LSGGQK+RV++   +L    +L LDEP S LD      +++ IAKL D++D      T++   HQPS
Sbjct:   23 KAGERVAIIGESGAGKSTLLNLIAG---FEFPAQGEIWLNDKNHTRSAPYERPVSMLFQENNLFPHLTVQQNLALGIKPSLKLTALEQEKIEQAACSV---GLGDYLERL-----PNSLSGGQKQRVALARCLLRDKPILLLDEPFSALDQKLRVEMLALIAKLCDEKD-----LTLLLVTHQPS 191          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_ECOUT (Aliphatic sulfonates import ATP-binding protein ssuB OS=Escherichia coli (strain UTI89 / UPEC) GN=ssuB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 62/193 (32.12%), Postives = 91/193 (47.15%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEV 782
            +L  L  +   G+ +A++G SG GKSTLL  LAG     T  AG++L      A     +  + QD  L+   +V + V             K Q ++ A   +  +GL++    R G W A  LSGGQK+RV++   ++ RP LL LDEP   LD+     +   I  L Q +HG    T++   H  S  V
Sbjct:   26 VLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGL---ETPTAGDVLAGTTPLAEIQDDTRMMFQDARLLPWKSVIDNVGLGL---------KGQWRDAARQALAAVGLEN----RAGEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ-EHGF---TVLLVTHDVSEAV 197          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LOLD_HAES15.477e-1230.94Lipoprotein-releasing system ATP-binding protein l... [more]
HLYB_PROVU5.477e-1230.10Alpha-hemolysin translocation ATP-binding protein ... [more]
ABCBB_HUMAN5.477e-1230.30Bile salt export pump OS=Homo sapiens GN=ABCB11 PE... [more]
ABCB9_MOUSE5.477e-1229.65ATP-binding cassette sub-family B member 9 OS=Mus ... [more]
YDBJ_BACSU7.154e-1228.11Uncharacterized ABC transporter ATP-binding protei... [more]
Y3423_BRUAB7.154e-1227.32Putative ATP-binding protein BruAb2_1123 OS=Brucel... [more]
UGPC_VIBCH7.154e-1234.50sn-glycerol-3-phosphate import ATP-binding protein... [more]
UGPC_PARDP7.154e-1231.15sn-glycerol-3-phosphate import ATP-binding protein... [more]
THIQ_HAEI87.154e-1233.51Thiamine import ATP-binding protein thiQ OS=Haemop... [more]
SSUB_ECOUT7.154e-1232.12Aliphatic sulfonates import ATP-binding protein ss... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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