CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB1_BURXL (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Burkholderia xenovorans (strain LB400) GN=ssuB1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 59/198 (29.80%), Postives = 95/198 (47.98%), Query Frame = 3
Query:  180 GQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQK--KERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            G++ G R +L G       G  +AI+G SGCGKSTLL  +AG       +A   ++  R        +  + QD  L+   +V           L + M  L +  +E A   + E+GL +    R   W A+ LSGGQ++RV++   ++ RP+LL LDEP   LD+     + + I +L  R+H   +  +   +H+
Sbjct:   86 GKRYGEREVLSGFDLSIERGSFVAIVGRSGCGKSTLLRLVAG-----LEKATSGVLEKRNEEGGPLDTRIMFQDARLLPWKSV-----------LQNVMLGLGRSAREDARAVLAEVGLLE----RANDWPAQ-LSGGQRQRVALARALVHRPQLLLLDEPLGALDALTRIEMHALIERL-WREHRFTALLVTHDVHE 261          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: RBSA_YERPS (Ribose import ATP-binding protein rbsA OS=Yersinia pseudotuberculosis GN=rbsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 60/207 (28.99%), Postives = 102/207 (49.28%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR-------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            G    L+G+      GE+ A+MG +G GKSTL+  LA   G+ T  +GEILI GR       K AL  G S  + Q+  L   LTV+E ++  ++L     + + +   + +  I  +G Q   +  +      GL+  ++++V I   +    ++L +DEPT+ L +  ++ +   I +L  RD G+     I  I    +EV++L
Sbjct:   17 GKFQALKGVDLTVFSGEIHALMGENGAGKSTLMKILA---GAYTTTSGEILIEGRPWSIKGPKDALNAGIS-LIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMVMQTQAVIDRLGAQFKASDLV-----MGLTIAEQQQVEIARALHRNSRILVMDEPTAALSTRETHRLFELILRL--RDEGMA----IIYISHRMAEVYEL 208          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: RBSA_YERPN (Ribose import ATP-binding protein rbsA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rbsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 60/207 (28.99%), Postives = 102/207 (49.28%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR-------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            G    L+G+      GE+ A+MG +G GKSTL+  LA   G+ T  +GEILI GR       K AL  G S  + Q+  L   LTV+E ++  ++L     + + +   + +  I  +G Q   +  +      GL+  ++++V I   +    ++L +DEPT+ L +  ++ +   I +L  RD G+     I  I    +EV++L
Sbjct:   17 GKFQALKGVDLTVFSGEIHALMGENGAGKSTLMKILA---GAYTTTSGEILIEGRPWSIKGPKDALNAGIS-LIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMVMQTQAVIDRLGAQFKASDLV-----MGLTIAEQQQVEIARALHRNSRILVMDEPTAALSTRETHRLFELILRL--RDEGMA----IIYISHRMAEVYEL 208          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: RBSA_YERPE (Ribose import ATP-binding protein rbsA OS=Yersinia pestis GN=rbsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 60/207 (28.99%), Postives = 102/207 (49.28%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR-------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            G    L+G+      GE+ A+MG +G GKSTL+  LA   G+ T  +GEILI GR       K AL  G S  + Q+  L   LTV+E ++  ++L     + + +   + +  I  +G Q   +  +      GL+  ++++V I   +    ++L +DEPT+ L +  ++ +   I +L  RD G+     I  I    +EV++L
Sbjct:   17 GKFQALKGVDLTVFSGEIHALMGENGAGKSTLMKILA---GAYTTTSGEILIEGRPWSIKGPKDALNAGIS-LIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMVMQTQAVIDRLGAQFKASDLV-----MGLTIAEQQQVEIARALHRNSRILVMDEPTAALSTRETHRLFELILRL--RDEGMA----IIYISHRMAEVYEL 208          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: RBSA_YERPA (Ribose import ATP-binding protein rbsA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rbsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 60/207 (28.99%), Postives = 102/207 (49.28%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR-------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVFQL 791
            G    L+G+      GE+ A+MG +G GKSTL+  LA   G+ T  +GEILI GR       K AL  G S  + Q+  L   LTV+E ++  ++L     + + +   + +  I  +G Q   +  +      GL+  ++++V I   +    ++L +DEPT+ L +  ++ +   I +L  RD G+     I  I    +EV++L
Sbjct:   17 GKFQALKGVDLTVFSGEIHALMGENGAGKSTLMKILA---GAYTTTSGEILIEGRPWSIKGPKDALNAGIS-LIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMVMQTQAVIDRLGAQFKASDLV-----MGLTIAEQQQVEIARALHRNSRILVMDEPTAALSTRETHRLFELILRL--RDEGMA----IIYISHRMAEVYEL 208          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PSTB_DEIRA (Phosphate import ATP-binding protein pstB OS=Deinococcus radiodurans GN=pstB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGR--LGSNTRQAGEILINGRKRALAYGTSA----------YVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAAS 683
            G++  ++ +    RPG + A +GPSGCGK+T L A+     L    R  G IL++G+     Y  S            V Q      T++V + V   A L+L     +    + AE +++   L D +  R+    A GLSGGQ++R+ I   +   P++L +DEPTS LD A++
Sbjct:   17 GDKQAVKNVNLDVRPGTVNAFIGPSGCGKTTFLRAINRMHDLTPGARVTGSILLDGQD---IYSPSVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLTGVKNRDHLMQVAERSLRGAALWDEVKDRLNT-PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 186          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PSTB_COLP3 (Phosphate import ATP-binding protein pstB OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pstB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 54/185 (29.19%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDAL--AGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTL------TVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 722
            G +  L  +T     G++ A +GPSGCGKSTLL ++     L  N   +GEI ++G      +   A + +   ++         T+ E V Y  ++   +   +L   E AE +++   L + +  R+    A GLSGGQ++R+ I   +  +P++L LDEPTS LD  ++  +   I  L ++
Sbjct:   43 GKKQALNNITMSIPKGQVTAFIGPSGCGKSTLLRSINRMNDLVDNCHISGEINLHGSNIYDKHVDVAELRRKVGMVFQRPNPFPKTIYENVVYGLRIMGENNRRRLD--EAAEQSLRSAALWNEVKDRLHE-SALGLSGGQQQRLVIARAIAIQPEVLLLDEPTSALDPISTLTIEELINDLKKQ 224          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: POTA_MESFL (Spermidine/putrescine import ATP-binding protein potA OS=Mesoplasma florum GN=potA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 54/180 (30.00%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA-LAYGTSAYVT--QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 734
            +L+G+    + GE + ++GPSGCGK+T L  +AG    N+   G+I+  G+    +      + T  Q  AL   L V + + +   L+   T   + ++E  +  I+++GL+   +  I       LSGGQK+RV+I   ++ +PK+L LDEP + LD     ++   + +L QR+ G+
Sbjct:   20 VLKGIDLNIKEGEFITLLGPSGCGKTTTLRIVAGFEKPNS---GQIMFEGKDLLPIPINKRQFNTIFQSYALFPHLNVFDNIAFG--LRTKKTKKDILQREVLKQ-IRQVGLEGFEDRNIND-----LSGGQKQRVAIARALVMKPKVLLLDEPLAALDVQLRQHMREELKRL-QREIGI 187          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNC_LACGA (Phosphonates import ATP-binding protein phnC OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=phnC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 56/190 (29.47%), Postives = 97/190 (51.05%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGT--------------SAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            GE + ++G SG GKSTLL ++  RL   ++  G+ILI+G+    A G               S  + +  +++  +      YY       +  TK + K++A   ++ + L D + TR     A  LSGGQ++RV+I   +   PK++  DEPT+ LD   S  VM  +  L++ ++G+   T++A++H
Sbjct:   35 GEFVVVVGLSGAGKSTLLRSI-NRLQDVSK--GDILIDGKSITSAKGKDLREIRRDIGMIFQSFNLVKRSSVLRNVLTGRVAYYPTWKTTFNLFTK-EDKQKAYEALQRVDLADKVYTR-----ADQLSGGQQQRVAIARVLTQNPKIILADEPTASLDPQTSRRVMHDLKMLNE-EYGM---TVVANLH 211          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: PHNC_BURMA (Phosphonates import ATP-binding protein phnC OS=Burkholderia mallei GN=phnC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 59/212 (27.83%), Postives = 96/212 (45.28%), Query Frame = 3
Query:  168 TVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQA------------GEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQ 767
            T P+G+K      L+ +     PGE++A++G SG GKSTLL  +A    S+ R +            G I  + R+     G   +V Q   L+  L+V   V   A  ++P       +  RA+  +    L +          A  LSGGQ++R ++   ++ R +++  DEP + LD AAS  VM  +  L+         T++ S+HQ
Sbjct:   12 TFPNGRKG-----LEDIDLAIAPGEMVALIGASGSGKSTLLRQIASFSSSDARPSRIDIFGRSIQRDGRIARDVRRMRRDIG---FVFQQFNLVNRLSVETNVLIGALARVPMWRRLAGRFSRADRALAAQALGEVGIAEHARERAANLSGGQQQRAALARALVQRARIILADEPIASLDPAASRRVMEMLRALNANHR----LTVLVSLHQ 211          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSUB1_BURXL9.343e-1229.80Aliphatic sulfonates import ATP-binding protein ss... [more]
RBSA_YERPS9.343e-1228.99Ribose import ATP-binding protein rbsA OS=Yersinia... [more]
RBSA_YERPN9.343e-1228.99Ribose import ATP-binding protein rbsA OS=Yersinia... [more]
RBSA_YERPE9.343e-1228.99Ribose import ATP-binding protein rbsA OS=Yersinia... [more]
RBSA_YERPA9.343e-1228.99Ribose import ATP-binding protein rbsA OS=Yersinia... [more]
PSTB_DEIRA9.343e-1231.25Phosphate import ATP-binding protein pstB OS=Deino... [more]
PSTB_COLP39.343e-1229.19Phosphate import ATP-binding protein pstB OS=Colwe... [more]
POTA_MESFL9.343e-1230.00Spermidine/putrescine import ATP-binding protein p... [more]
PHNC_LACGA9.343e-1229.47Phosphonates import ATP-binding protein phnC OS=La... [more]
PHNC_BURMA9.343e-1227.83Phosphonates import ATP-binding protein phnC OS=Bu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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