CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 58/196 (29.59%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING----RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMG-LQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            G++ ++ GL+     GE   ++GP+G GKST+   +   LG  T   GEI + G     +  LA      V Q D L    TV E +    +     T    ++ E    ++ E   L++  + R+       LSGG KRR+++   ++  P+LL LDEPT+GLD  A + +  R+  L  R      +TI+ + H
Sbjct:   47 GDKPVINGLSFTVAAGECFGLLGPNGAGKSTITRMI---LGMTTPGTGEITVLGVPVPSRARLARMRIGVVPQFDNLDLEFTVRENLLVFGRYFRMST----REIEAVIPSLLEFARLENKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-----GKTILLTTH 225          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MRP4_HUMAN (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 59/176 (33.52%), Postives = 83/176 (47.16%), Query Frame = 3
Query:  186 KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMG-------LQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYV 692
            K      LQGL+   RPGELLA++GP G GKS+LL A+ G L  +    G + ++GR         AYV+Q           +   +S  L+      K  +KER E  IK          L+D   T IG  G   LSGGQK RV++   +     +  LD+P S +D+  S ++
Sbjct:  421 KASETPTLQGLSFTVRPGELLAVVGPVGAGKSSLLSAVLGELAPS---HGLVSVHGR--------IAYVSQ-----------QPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTT-LSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHL 573          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MACB_PASMU (Macrolide export ATP-binding/permease protein macB OS=Pasteurella multocida GN=macB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 60/190 (31.58%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  201 SILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK------------RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 734
            ++L+ +      GE++AI+G SG GKSTL++ L G L  +    GE L  GR+            R   +G   +V Q   L+  LT  E V   A   +   M K ++ ERA+  +  +GL++ +  +        LSGGQ++RVSI   ++   +++  DEPT  LDS +S  V+S +  L+ + H V
Sbjct:   24 TVLKSINLKIYAGEMVAIVGASGSGKSTLMNLL-GVL--DQADDGEYLFRGRQISTLSSDELADLRCYHFG---FVFQRYHLLPHLTAVENVEIPA---IYSAMEKEKRIERAQKLLCRLGLENQLKHK-----PSQLSGGQQQRVSIARALMNGGEIILADEPTGALDSQSSQEVLSVLKTLNHQGHTV 199          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LOLD_SILPO (Lipoprotein-releasing system ATP-binding protein lolD OS=Silicibacter pomeroyi GN=lolD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 58/198 (29.29%), Postives = 94/198 (47.47%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---------KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIAS 758
            G   +L+G+     PGE++A++ PSG GKSTLL  ++G L  +   AG + I G+         +  +      +V Q   L+   T  E V      QL + + + + + RA   +  +G++     R        LSGG+++RV+ C  +   P+LL  DEPT  LD A S  V   + +L +   G G   +IA+
Sbjct:   21 GEVRVLRGVDLSVEPGEMVALVAPSGAGKSTLLH-ISGLL--DVPDAGRVEIAGQDMTGRGDRARTGVRRRDVGFVYQFHHLLPEFTALENVVLP---QLANGIGEGEARARARALLSRVGVEGRAGHR-----PAALSGGEQQRVAFCRALANAPRLLLADEPTGNLDPATSDQVFDALVELVR---GTGLSALIAT 204          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LACK_RHIRD (Lactose transport ATP-binding protein lacK OS=Rhizobium radiobacter GN=lacK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 56/182 (30.77%), Postives = 88/182 (48.35%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            G+  +++G+      GE +  +GPSGCGKSTLL  +A   G     +GE+ I G         KR +     A V Q  AL   +TV E + ++ +      M K + + R     K + L   M+ +      K LSGGQ++RV+I   ++ +P +   DEP S LD+    ++   IA+L
Sbjct:   14 GSLEVIKGVNLEVSSGEFVVFVGPSGCGKSTLLRMIA---GLEDISSGELTIGGTVMNDVDPSKRGI-----AMVFQTYALYPHMTVRENMGFALRFA---GMAKDEIERRVNAAAKILELDALMDRK-----PKALSGGQRQRVAIGRAIVRQPDVFLFDEPLSNLDAELRVHMRVEIARL 179          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: HLYB_ECO57 (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli O157:H7 GN=hlyB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 57/196 (29.08%), Postives = 97/196 (49.49%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALA-----YGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            IL  +  Y   G+++ I+G SG GKSTL   L       T   G+ILI+G   +LA           V Q++ L+    +      S  + +   + +  +   A   I+E  L++  NT +G  G  GLSGGQ++R++I   ++T P++L  DE TS LD  +   +M  ++++ +      +RT+I   H+ S+
Sbjct:  484 ILNNINLYISKGDVIGIVGRSGSGKSTLTKLLQRFYIPET---GQILIDGHDLSLADPEWLRRQIGVVLQENILLNRSIIDNITLASPAVSMEQAI-EAARLAGAHDFIRE--LKEGYNTIVGEQGV-GLSGGQRQRIAIARALVTNPRILIFDEATSALDYESENIIMKNMSRICK------NRTVIIIAHRLST 666          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: HEPA_ANASP (Heterocyst differentiation ATP-binding protein hepA OS=Anabaena sp. (strain PCC 7120) GN=hepA PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 62/196 (31.63%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS-----AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            +L  +T     G+  A++G SG GK+TL D L  R    T   G+IL++G         S     A V+QD  +  T ++ + + Y         + ++ +   A   I+EM   +  +T++G  G + LSGGQ++R++I   +L  P++L LDE TS LDS +   +   I KL      VG RT+IA  H+ S+
Sbjct:  379 VLNNITLTIERGKTTALVGASGAGKTTLAD-LIPRFYDPTE--GQILVDGLDVQYFEINSLRRKMAVVSQDTFIFNT-SIRDNIAYGTSGASEAEIREVARLANALQFIEEM--PEGFDTKLGDRGVR-LSGGQRQRIAIARALLRDPEILILDEATSALDSVSERLIQESIEKL-----SVG-RTVIAIAHRLST 561          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: CYSA1_CHRVO (Sulfate/thiosulfate import ATP-binding protein cysA 1 OS=Chromobacterium violaceum GN=cysA1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 51/171 (29.82%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGA----KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDH 728
            GEL+A++GPSGCGK+TLL  +A   G     AG +L++G+  +  +       +V Q  AL   +TV + V +  +++      + ++   AE+  K   L D +      W A      LSGGQ++R+++   +   P++L LDEP   LD+     +   + KL    H
Sbjct:   28 GELVALLGPSGCGKTTLLRIIA---GLEQADAGRVLLDGQDASATHVRERQVGFVFQHYALFRHMTVFDNVAFGLRMK-----PRRERPSEAEIARKVHALLDLVQL---DWLADRLPAQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRKLHDELH 187          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 51/172 (29.65%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-----RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 704
            +LQ ++    PG++ A++GPSG GKS+ ++ L         Q G +L++G           +   + V+Q+  L    ++++ + Y       + + +  +K  A   I E  LQD  +T  G  GA+ LSGGQK+RV++   ++  P +L LDE TS LD+ + Y +   I
Sbjct:  517 VLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY---PLQGGRVLLDGEPIGAYDHKYLHRVISLVSQEPVLFAR-SITDNISYGLPTVPFEMVVEAAQKANAHGFIME--LQDGYSTETGEKGAQ-LSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAI 681          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 57/217 (26.27%), Postives = 97/217 (44.70%), Query Frame = 3
Query:  132 DGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS----AYVTQDDALITTLTVSEAVYYSAQLQ--LPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            D   L  Q+L    P  +  G +  +Q LT   + GE    +G +G GK+T L  L+G     T  +G   I G+    +         Y  Q DAL   LTV E +   A+++  +   +  +  ++  E  + +   + +            LSGG KR++S+ I M+  P ++ LDEP++G+D  A  ++   I++L  R    G   +I + H
Sbjct: 1449 DNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGE---ETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFT----------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRS---GKTAVILTTH 1649          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NODI1_RHIME9.343e-1229.59Nod factor export ATP-binding protein I OS=Rhizobi... [more]
MRP4_HUMAN9.343e-1233.52Multidrug resistance-associated protein 4 OS=Homo ... [more]
MACB_PASMU9.343e-1231.58Macrolide export ATP-binding/permease protein macB... [more]
LOLD_SILPO9.343e-1229.29Lipoprotein-releasing system ATP-binding protein l... [more]
LACK_RHIRD9.343e-1230.77Lactose transport ATP-binding protein lacK OS=Rhiz... [more]
HLYB_ECO579.343e-1229.08Alpha-hemolysin translocation ATP-binding protein ... [more]
HEPA_ANASP9.343e-1231.63Heterocyst differentiation ATP-binding protein hep... [more]
CYSA1_CHRVO9.343e-1229.82Sulfate/thiosulfate import ATP-binding protein cys... [more]
ABCB9_RAT9.343e-1229.65ATP-binding cassette sub-family B member 9 OS=Ratt... [more]
AB1A_ARATH9.343e-1226.27ABC transporter A family member 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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