CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 69/244 (28.28%), Postives = 115/244 (47.13%), Query Frame = 3
Query:   60 FEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING---RKRALAY--GTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSS 776
            F+++E ++ +KT     NVN D      + ++D+  T P    + +  I   L      G+++A++G SG GKST++ +L  R    T   G ++++G   R   L +  G    V Q+  L  T T+ E + Y       + +T   K   A   I    L +   T++G  G + LSGGQK+R+SI   ++  P +L LDE TS LD+ +   V   +      D  +  RT +   H+ S+
Sbjct:  339 FQMIERNTEDKTGRKLGNVNGD------ILFKDVTFTYPS---RPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMI-SLIERFYEPTD--GAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFAT-TIRENIMYGKDDATSEEITNAAKLSEAISFINN--LPEGFETQVGERGIQ-LSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEAL------DRVMVGRTTVVVAHRLST 560          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: ZNUC_YERE8 (Zinc import ATP-binding protein znuC OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=znuC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 58/193 (30.05%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTL--TVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            G+R +L  ++   RPG +L ++GP+G GKSTL+  + G +   +   G I+   R+  L  G   YV Q   L TTL  TVS  +     ++  D +  L++   A +  + M               + LSGG+ +RV +   +L RP+LL LDEPT G+D      +   I +L +R+ G     +   +H
Sbjct:   15 GSRRVLNDISLSLRPGRILTLLGPNGAGKSTLVRVVLGLIAPTS---GSII---REPGLRIG---YVPQKLHLDTTLPLTVSRFMRLKPGVRKADILPALKRVHAAHLLDQPM---------------QKLSGGENQRVLLARALLNRPQLLVLDEPTQGVDVNGQLALYDLIEQL-RRELGCAVLMVSHDLH 182          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YVCR_BACSU (Uncharacterized ABC transporter ATP-binding protein yvcR OS=Bacillus subtilis GN=yvcR PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------------RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTR-IGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEVF 785
            GE + IMGPSG GK+TLL+ LA  +   T+  GE++ING              R+R L +     V QD  L+ TLT+ E +       LP  + K++ +E  E  + E  L D +  + I       +SGGQ++R +    ++  P L+  DEPT  LDS ++  VM+ +A+L++        TI+   H  ++  F
Sbjct:   35 GEFVGIMGPSGSGKTTLLNLLA-TIDKPTQ--GEMMINGIQPKTLKDQELALFRRRELGF-----VFQDFNLLDTLTIRENIL------LPLALDKVKLREM-EARLDE--LADTLQIKHILDHRTYEVSGGQQQRAACARAIIHNPALILADEPTGNLDSKSAKQVMNTLAQLNEEKEA----TILLVTHDATAASF 211          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YNJD_ECOLI (Uncharacterized ABC transporter ATP-binding protein ynjD OS=Escherichia coli (strain K12) GN=ynjD PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRAL---AYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSA 677
            G+++ +MGPSGCGKSTL   + G L       GE+ +N ++  +   A      + QD  L    +V +    +  L LP T+    ++      ++  GL+ A +          LSGGQ+ RV++   +L +PK L LDEP S LD A
Sbjct:   27 GDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQ----NLLLALPATLKGNARRNAVNDALERSGLEGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 167          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: YGAD_BACSU (Putative multidrug export ATP-binding/permease protein ygaD OS=Bacillus subtilis GN=ygaD PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 65/227 (28.63%), Postives = 101/227 (44.49%), Query Frame = 3
Query:   39 VPAISRAFEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTK--LQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            + ++ R FE ++         ++I  ++  G   F         V    +K   +IL  ++     GE +A++G SG GKSTL+ +L  R    T  +G +LI+G         S        L  T   SE +  +  +  PD   +  ++  + A      M   +   TR+G  G K LSGGQK+R+SI    L  P LL LDE TS LD  + +Y+   + KL
Sbjct:  309 IASMDRVFEFIDEPYELTDKPNAIKADQIRGGVEFQN-------VSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLV-SLIPRFYDVT--SGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIEAAKAANAHEFIMSFPEGYETRVGERGVK-LSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKL 524          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: Y887_METMA (Putative ABC transporter ATP-binding protein MM_0887 OS=Methanosarcina mazei GN=MM_0887 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 59/183 (32.24%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRA-----LAYGTSAYVTQD--DALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            GE +A++G +G GKSTL   L G L      +GE+L+ G K       +  GT   V QD  D ++      +  +    + L     K++ KE  EM    +GL               LSGGQK+ V+I   +  RP+++ LDEPT+GLD  +S  V+  I K++ R+ G+   T++ S H
Sbjct:   74 GERVAVLGANGAGKSTLFKHLNGILRP---LSGEVLVKGEKITKKNVRMCRGTVGIVFQDPDDQVLAPSVEEDVAFGPINMGLSREEVKMRVKEALEM----VGLNGFEER-----APHHLSGGQKKLVAIAGILAMRPEVIVLDEPTAGLDPLSSARVLKLITKMN-RELGI---TLLLSTH 240          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: UGPC_RHOS1 (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=ugpC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGR---KRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 719
            ++ G+      GE + I+GPSGCGKSTLL  +A   G     AGEI I GR   +        A V Q+ AL   +TV E + Y  ++     ++K + +ER   + + + L   ++ +      + LSGGQ++RV++   ++  P    LDEP S LD+     +  +I +L +
Sbjct:   18 VIHGVDLEIADGEFVVIVGPSGCGKSTLLRMVA---GLEEITAGEIAIGGRVVNRLEPRERDIAMVFQNYALYPHMTVRENMAYGLRIA---KLSKAEIEERVARSARMLELGQLLDRK-----PRQLSGGQRQRVAMGRALVRNPAAFLLDEPLSNLDAKLRVQMRLQIKELQR 181          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: THIQ_SALPA (Thiamine import ATP-binding protein thiQ OS=Salmonella paratyphi A GN=thiQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 51/162 (31.48%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  237 GELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVT---QDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 713
            GE +AI+GPSG GKSTLL+ +AG L      +G +LI G    L   +   V+   Q++ L + L V + +        P       ++E+ +   ++MG++  M TR+ G     LSGGQ++RV++   ++    +L LDEP S LD A    +++ ++ +
Sbjct:   25 GEQVAILGPSGAGKSTLLNLIAGFLAP---ASGTLLIAGEDHTLTPPSRRPVSMLFQENNLFSHLNVQQNIGLGLN---PGLTLNASQREKRDAIARQMGIESLM-TRLPG----ELSGGQRQRVALARCLVREQPVLLLDEPFSALDPALRQEMLTLVSDI 175          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_ECOLI (Aliphatic sulfonates import ATP-binding protein ssuB OS=Escherichia coli (strain K12) GN=ssuB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 62/193 (32.12%), Postives = 91/193 (47.15%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEV 782
            +L  L  +   G+ +A++G SG GKSTLL  LAG     T  AG++L      A     +  + QD  L+   +V + V             K Q ++ A   +  +GL++    R G W A  LSGGQK+RV++   ++ RP LL LDEP   LD+     +   I  L Q +HG    T++   H  S  V
Sbjct:   26 VLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGL---ETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGL---------KGQWRDAARRALAAVGLEN----RAGEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ-EHGF---TVLLVTHDVSEAV 197          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: SSUB_ECO57 (Aliphatic sulfonates import ATP-binding protein ssuB OS=Escherichia coli O157:H7 GN=ssuB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 62/193 (32.12%), Postives = 91/193 (47.15%), Query Frame = 3
Query:  204 ILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQPSSEV 782
            +L  L  +   G+ +A++G SG GKSTLL  LAG     T  AG++L      A     +  + QD  L+   +V + V             K Q ++ A   +  +GL++    R G W A  LSGGQK+RV++   ++ RP LL LDEP   LD+     +   I  L Q +HG    T++   H  S  V
Sbjct:   26 VLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGL---ETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGL---------KGQWRDAARRALAAVGLEN----RAGEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ-EHGF---TVLLVTHDVSEAV 197          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB10B_ARATH9.343e-1228.28ABC transporter B family member 10 OS=Arabidopsis ... [more]
ZNUC_YERE81.220e-1130.05Zinc import ATP-binding protein znuC OS=Yersinia e... [more]
YVCR_BACSU1.220e-1131.82Uncharacterized ABC transporter ATP-binding protei... [more]
YNJD_ECOLI1.220e-1132.00Uncharacterized ABC transporter ATP-binding protei... [more]
YGAD_BACSU1.220e-1128.63Putative multidrug export ATP-binding/permease pro... [more]
Y887_METMA1.220e-1132.24Putative ABC transporter ATP-binding protein MM_08... [more]
UGPC_RHOS11.220e-1130.86sn-glycerol-3-phosphate import ATP-binding protein... [more]
THIQ_SALPA1.220e-1131.48Thiamine import ATP-binding protein thiQ OS=Salmon... [more]
SSUB_ECOLI1.220e-1132.12Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_ECO571.220e-1132.12Aliphatic sulfonates import ATP-binding protein ss... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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