CX044004

Overview
NameCX044004
Unique NameCX044004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MACB_ECOLI (Macrolide export ATP-binding/permease protein macB OS=Escherichia coli (strain K12) GN=macB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 65/218 (29.82%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  144 LTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALA--GRLGSNT-RQAGEILINGRKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKER---AEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            L  +D+  + P G ++    +L+G++     GE++AI+G SG GKSTL++ L    +  S T R AG+ +      ALA        ++ Q   L++ LT  + V      ++P     L++K+R   A+  ++ +GL+D        +    LSGGQ++RVSI   ++   +++  DEPT  LDS +   VM+ + +L  R H     T+I   H P
Sbjct:    5 LELKDIRRSYPAGDEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNV------EVPAVYAGLERKQRLLRAQELLQRLGLEDRTE-----YYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-----TVIIVTHDP 204          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MACB_ECOL5 (Macrolide export ATP-binding/permease protein macB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=macB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 65/218 (29.82%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  144 LTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALA--GRLGSNT-RQAGEILINGRKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKER---AEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            L  +D+  + P G ++    +L+G++     GE++AI+G SG GKSTL++ L    +  S T R AG+ +      ALA        ++ Q   L++ LT  + V      ++P     L++K+R   A+  ++ +GL+D        +    LSGGQ++RVSI   ++   +++  DEPT  LDS +   VM+ + +L  R H     T+I   H P
Sbjct:    5 LELKDIRRSYPAGDEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNV------EVPAVYAGLERKQRLLRAQELLQRLGLEDRTE-----YYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-----TVIIVTHDP 204          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: MACB1_ECOK1 (Macrolide export ATP-binding/permease protein macB 1 OS=Escherichia coli O1:K1 / APEC GN=macB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 65/218 (29.82%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  144 LTWQDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALA--GRLGSNT-RQAGEILINGRKRALAYGTS---AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKER---AEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIHQP 770
            L  +D+  + P G ++    +L+G++     GE++AI+G SG GKSTL++ L    +  S T R AG+ +      ALA        ++ Q   L++ LT  + V      ++P     L++K+R   A+  ++ +GL+D        +    LSGGQ++RVSI   ++   +++  DEPT  LDS +   VM+ + +L  R H     T+I   H P
Sbjct:    5 LELKDIRRSYPAGDEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNV------EVPAVYAGLERKQRLLRAQELLQRLGLEDRTE-----YYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-----TVIIVTHDP 204          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LPTB_SHIFL (Lipopolysaccharide export system ATP-binding protein lptB OS=Shigella flexneri GN=lptB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 51/186 (27.42%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  198 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRAL------AYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVG 737
            R +++ ++     GE++ ++GP+G GK+T    + G +    R AG I+I+    +L      A     Y+ Q+ ++   L+V + +   A LQ+ D ++  Q+++RA   ++E  ++   ++       + LSGG++RRV I   +   PK + LDEP +G+D  +   +   I  L  RD G+G
Sbjct:   16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL--RDSGLG 189          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LPTB_ECOLI (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli (strain K12) GN=lptB PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 51/186 (27.42%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  198 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRAL------AYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVG 737
            R +++ ++     GE++ ++GP+G GK+T    + G +    R AG I+I+    +L      A     Y+ Q+ ++   L+V + +   A LQ+ D ++  Q+++RA   ++E  ++   ++       + LSGG++RRV I   +   PK + LDEP +G+D  +   +   I  L  RD G+G
Sbjct:   16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL--RDSGLG 189          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LPTB_ECOL6 (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli O6 GN=lptB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 51/186 (27.42%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  198 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRAL------AYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVG 737
            R +++ ++     GE++ ++GP+G GK+T    + G +    R AG I+I+    +L      A     Y+ Q+ ++   L+V + +   A LQ+ D ++  Q+++RA   ++E  ++   ++       + LSGG++RRV I   +   PK + LDEP +G+D  +   +   I  L  RD G+G
Sbjct:   16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL--RDSGLG 189          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: LPTB_ECO57 (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli O157:H7 GN=lptB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 51/186 (27.42%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  198 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRAL------AYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVG 737
            R +++ ++     GE++ ++GP+G GK+T    + G +    R AG I+I+    +L      A     Y+ Q+ ++   L+V + +   A LQ+ D ++  Q+++RA   ++E  ++   ++       + LSGG++RRV I   +   PK + LDEP +G+D  +   +   I  L  RD G+G
Sbjct:   16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL--RDSGLG 189          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: HRTA_STAS1 (Putative hemin import ATP-binding protein hrtA OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hrtA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 53/183 (28.96%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  180 GQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILING--------RKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 704
            G  +    +L+G+      GE + + G SG GK+TLL  L G L   ++ +G+IL N         +   L      ++ Q   L+  L V   +     +     MT  +  +RAE  +K++GL    N R+  +    LSGG+K+RV+I   ++  PK++  DEPT+ LD+  +  V+  I
Sbjct:   13 GNGQSETPVLKGINFNVNEGEFVILNGASGSGKTTLLTILGGLL---SQSSGDILYNNQPLFTRDRKASELRLNEIGFIFQSSHLVPYLKVKAQL---TTIGKEAGMTMQEANQRAETLLKQIGL----NHRLTAFPHM-LSGGEKQRVAIVRALMNHPKIILADEPTASLDAERATEVIEMI 184          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: FHUC_BACSU (Iron(3+)-hydroxamate import ATP-binding protein fhuC OS=Bacillus subtilis GN=fhuC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 57/200 (28.50%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  192 GNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALI-------TTLTVSEAVYYSAQLQLPDTMTKLQKKERA--EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIIASIH 764
            G+R I++ L      G++  ++GP+GCGKST+L  ++  + S+   AG + +NG+  A+   ++  + +D A++       + LTV E V Y  +        +L  ++R   +  ++E G+ +     I     + LSGGQ++RV I + +    +LL LDEPT+ LD A    ++  + +L++       RTI+  IH
Sbjct:   14 GDRVIVEDLNISIPKGKITTLIGPNGCGKSTILKTMSRIMRSH---AGAVYLNGK--AIHKMSTKDIAKDMAILPQTPEAPSGLTVHELVSYG-RFPHQSGFGRLNDEDRRIIKWALEETGMAEYAERPI-----EALSGGQRQRVWIAMALAQGTELLLLDEPTTYLDLAHQLEILQLLDRLNKEQ----GRTILMVIH 198          
BLAST of CX044004 vs. ExPASy Swiss-Prot
Match: CBIO_METTH (Putative cobalt import ATP-binding protein cbiO OS=Methanobacterium thermoautotrophicum GN=cbiO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 54/182 (29.67%), Postives = 89/182 (48.90%), Query Frame = 3
Query:  153 QDLWVTVPDGQKKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQ---------DDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLD 671
            +DL  + PDG        L+G+      GE +A++GP+G GKSTL   L G L      AGE++I+G +   +      + Q         DD L +     +  +    L LP+     + +ER   +++++G+    N          LSGG+K+RV+I   +  +P+++ LDEPT+GLD
Sbjct:    5 RDLSYSYPDGTPA-----LRGINMKVERGERVAVIGPNGAGKSTLFLHLNGILKP---AAGEVIIDGERVDYSKDELIKIRQKVGIVFQNPDDQLFSPTVREDVAFGPMNLGLPED----EVEERVAESLEKVGMSGYENR-----APHHLSGGEKKRVAIAGILAMKPEIMVLDEPTTGLD 169          
The following BLAST results are available for this feature:
BLAST of CX044004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MACB_ECOLI1.220e-1129.82Macrolide export ATP-binding/permease protein macB... [more]
MACB_ECOL51.220e-1129.82Macrolide export ATP-binding/permease protein macB... [more]
MACB1_ECOK11.220e-1129.82Macrolide export ATP-binding/permease protein macB... [more]
LPTB_SHIFL1.220e-1127.42Lipopolysaccharide export system ATP-binding prote... [more]
LPTB_ECOLI1.220e-1127.42Lipopolysaccharide export system ATP-binding prote... [more]
LPTB_ECOL61.220e-1127.42Lipopolysaccharide export system ATP-binding prote... [more]
LPTB_ECO571.220e-1127.42Lipopolysaccharide export system ATP-binding prote... [more]
HRTA_STAS11.220e-1128.96Putative hemin import ATP-binding protein hrtA OS=... [more]
FHUC_BACSU1.220e-1128.50Iron(3+)-hydroxamate import ATP-binding protein fh... [more]
CBIO_METTH1.220e-1129.67Putative cobalt import ATP-binding protein cbiO OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G08-N16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044004 ID=CX044004; Name=CX044004; organism=Citrus sinensis; type=EST; length=791bp
CTTGTTTCAGCATGTCTTCTCTTGATCACTCTATTCCTGTGCCAGCAATC
AGTAGAGCATTTGAAGTAGTGGAGAGCAGTAGTAATAATAAAACCGCAAC
TCATAGTATTAATGTTAATGAAGATGATGGAGATGGTGTTTTCTTAACTT
GGCAAGATCTGTGGGTTACGGTTCCCGATGGTCAGAAAAAAGGCAACAGA
TCAATCCTTCAAGGTCTTACTGGCTACGCAAGACCTGGGGAGCTTTTGGC
TATTATGGGTCCTTCTGGTTGTGGAAAATCTACTCTTCTTGATGCTTTAG
CTGGAAGACTAGGATCGAACACAAGGCAAGCAGGAGAAATTCTAATTAAT
GGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACACAAGA
TGACGCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTACTCAG
CTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAGAAAGA
GCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAATACAAG
AATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAG
TTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTCTTGAC
GAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATGAGCAG
GATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAACAATAA
TAGCATCAATCCATCAACCTAGCAGCGAAGTTTTTCAGCTT
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