CX044000

Overview
NameCX044000
Unique NameCX044000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = -3 
Query:  360 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 602
            S ++LYVGNLSW V    L N F   G VV ARV++DR    ++ FGF++ SS  E   A+ SLNG D  GR I V E   R
Sbjct:  255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
The following BLAST results are available for this feature:
BLAST of CX044000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ROC2_ARATH7.856e-1147.5629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G06-N12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044000 ID=CX044000; Name=CX044000; organism=Citrus sinensis; type=EST; length=790bp
GCTCATGCCACCAAAATTGTCATTGATTATGAACACGGAAATGGCAAACT
GAAATCAAGCTTCACGATGAGGAATACAGCAACACTTAAAATCACAGACA
CTTAAATCAAACTAGTAAACCAAAATCAACCACTACCTGCAACACCTGCA
CCTCAGTATTTTTAACATAATGTTTACATATGAAAAAGCCTCAGGGACTT
CCCAGACACAAGATCTTGAATTCTGGTGGGCATTCGTACCCGCTATCCTG
CACCACCTTTCAGCCAAGGAGGATACTCCAAGCTAAGCAATTTCTTGTTA
CTAAAAGAAGTTTCTTCACTACAAACATGAACCGATCAAAACTGCAATCA
AGACTCAGTTCTGTCAACACCTTCTCTAACAATTATTGTCCGACCCCGAA
AGTCTGTTCCATTTAAAGAAAGTGCAGCATCACGTTCTGCGTCAGAAGAG
AAGGAAATAAACCCAAAAACTCGGGTGGTTTGTCCTTTACGATCGTGCAA
CACTCTAGCACTGACCACAGTCCCAAACCGGCCAAAATGATTTCTCAAAT
CCTCAGGTTTTACAGCCCAGGAAAGATTGCCAACATATAATTTATGAGGG
CTTTCATAGACAAAAATCTTCTTTGGTGGTGAAATCAATGCCTCAGCATT
CCTAGTCCGCGAATTCATATCAATTGAAAATCTCACCCGCATTTCACGTC
CACCCACATCAGATCCGTCCAATGCAATAATTGCATTTTTTGCTGAATTG
ATCGAACCCATTGTCAGGTAACCGCATCCACGACTTATGC
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