CX043996

Overview
NameCX043996
Unique NameCX043996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 58/159 (36.48%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  231 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPI--EGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKST-TIFQNYTILQVPKPMFAPK---MVACHIMPYPYAIFYCHS 689
            VFF  KDL  G  + ++F +    A    L R  AD+IPF+ ++LP +L   S    S  A+ M  TL  CE   +    + K C TSLESM++F   + G      V      T +  T  Q YT+  V KP+ +     MV CH MPY YA+F CH+
Sbjct:   97 VFFLEKDLFPGSKITLHFTRGGACA--MVLLRGRADAIPFASEKLPEILTQLSVPAGSRAAEDMRTTLAECEAALLGARDQAKHCVTSLESMVEFAAASLGTRDIRAVSTEVIGTGAAETPRQEYTVEAV-KPVVSVSGGNMVTCHGMPYAYAVFGCHT 252          
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 51/152 (33.55%), Postives = 70/152 (46.05%), Query Frame = 3
Query:  234 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHS 689
            FF  K LK G  MP+   K D       LPR  A  +PFS  ++  L + F  ++DS +AK +   L+ CE  P  GETK C  S E M+DF     G     +    T  +K   +  +   +   K     K V+CH   YP  ++YCHS
Sbjct:  417 FFREKMLKSGTIMPMPDIK-DKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGK---VTKSVSCHQTLYPSLLYYCHS 564          
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 51/152 (33.55%), Postives = 70/152 (46.05%), Query Frame = 3
Query:  234 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHS 689
            FF  K LK G  MP+   K D       LPR  A  +PFS  ++  L + F  ++DS +AK +   L+ CE  P  GETK C  S E M+DF     G     +    T  +K   +  +   +   K     K V+CH   YP  ++YCHS
Sbjct:  414 FFREKMLKSGTIMPMPDIK-DKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGK---VTKSVSCHQTLYPSLLYYCHS 561          
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 53/152 (34.87%), Postives = 70/152 (46.05%), Query Frame = 3
Query:  234 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHS 689
            FF  K LK G  MP+   K D       LPR  A  +PFS  ++  L + F   D+S + K +   L+ CE  P  GETK C  S E M+DF     G      V+ TT  TK +        ++        K V+CH   YPY ++YCHS
Sbjct:  415 FFREKMLKSGTIMPMPDIK-DKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNV---VVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHS 562          
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 45/152 (29.61%), Postives = 64/152 (42.11%), Query Frame = 3
Query:  234 FFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHS 689
            FF    LK G  +P+   K D       LPR     +PFS  +L  + + F   ++S +   +   +  CE PP  GETK C  S E M+DF     G     +       +K   +      +   K     K V+CH   YPY ++YCHS
Sbjct:  411 FFRESSLKEGTVIPMPDIK-DKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGK---LTKAVSCHQSLYPYLLYYCHS 558          
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 51/159 (32.08%), Postives = 73/159 (45.91%), Query Frame = 3
Query:  219 PSTMVFFTLKDLKIGETMPI--YFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKSTTIFQNYTILQVPKPMFAPKMVACHIMPYPYAIFYCHS 689
            P    FF   +L  G TMP+     K  P A+   LPR+ A  IPF    +    + F    D+ + KA+  T+  CE  P  GETK CATS E ++DF     G +   +   +T  +       N T +   K     + V+CH   +PY ++YCHS
Sbjct:  410 PEPGKFFRETELVSGNTMPMPDIKDKMPPRAF---LPRDIAKKIPFKPNAVS---EVFGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGK---VTRSVSCHQSLFPYLVYYCHS 559          
BLAST of CX043996 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  231 VFFTLKDLKIGETMPIYFRKRD-PSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLNTTFLTKSTTIFQNYTILQVPKPMFAPKM---VACHIMPYPYAIFYCHS 689
            +FF  ++LK G  + +     +  +A    LPR  AD IPF  + +  L   F    ++ LAKA++ T+  C+  P +GETK C TS E M+DF     G +    V+ +T L       ++  I +V K +   K+   V+CH   +PY ++YCHS
Sbjct:  127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSL---FGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDI---VVRSTVLPNGPG--ESIMIGKV-KGINGGKITSSVSCHEYLFPYMVYYCHS 274          
The following BLAST results are available for this feature:
BLAST of CX043996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BURP8_ORYSJ4.905e-1436.48BURP domain-containing protein 8 OS=Oryza sativa s... [more]
GP3_SOLLC6.406e-1433.55Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC6.406e-1433.55Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP1_SOLLC8.366e-1434.87Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
JP650_ARATH7.830e-1229.61Probable polygalacturonase non-catalytic subunit J... [more]
BURPC_ORYSJ1.336e-1132.08BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPG_ORYSJ6.629e-1132.48BURP domain-containing protein 16 OS=Oryza sativa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14G04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G04-N8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043996 ID=CX043996; Name=CX043996; organism=Citrus sinensis; type=EST; length=711bp
AATCTCTTCTCTTTCTGCTTCACTTGTTATCTGTGTTTCCTCTCCCTGAA
AAAAAAACATTACTAAAATACATAAGAAACTTCGATAATAGAAAAGAGAT
GGGGTTAAGATTTTCAGCTTGGAACCTCCTTCTTTCTCTACTCTTTCTGT
GTGCTCCGGTGCTTTCGGAGAATCTTCATGATTCTCATTCAATACCATCC
CACATGAATCACATGGACCCTTCAACGATGGTATTCTTCACCTTGAAGGA
TCTAAAGATTGGCGAAACGATGCCGATTTATTTTCGCAAGAGAGATCCTT
CAGCTTATCCTCAGGCTTTGCCTAGAGAAGAAGCAGATTCCATTCCATTT
TCATTGAAACAACTGCCTTACCTTCTTCAATTCTTCTCGTTCTCAGATGA
CTCACCCCTAGCCAAAGCCATGGAAGGGACCCTGAATCATTGCGAAGTTC
CTCCCATCGAAGGAGAAACCAAAATTTGTGCTACCTCTTTGGAATCCATG
CTTGATTTTGTACACGGAACTTTCGGATTGGAGACCAAATTCCAAGTTCT
AAACACAACATTTCTCACAAAATCAACTACCATTTTCCAAAATTACACTA
TTTTACAAGTGCCTAAACCAATGTTTGCTCCCAAGATGGTGGCATGTCAT
ATCATGCCTTACCCTTATGCAATCTTCTACTGCCACAGCCAAATGACTGA
GAACAAGTTAT
back to top