CX043978

Overview
NameCX043978
Unique NameCX043978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 71/232 (30.60%), Postives = 102/232 (43.97%), Query Frame = -1
Query:  112 IEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLST----HSPDEEYLGKEIEPAWREDPVI--NAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVT 789
            + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G  K   + P+      L+E++T +++  S  HAAVNF Q +   Y P     A C ++     D        K E   L   P  + A + + I  +L +       D    G    P + +  V       E+F+ +L E+E  I         R RN A   PYE L P   P  T
Sbjct:  475 LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG--KVAGFRPITGR-SQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP-----AICAMSAAPAPDSP----SGKSEADWLKMMPPALVALEKVNIYHLLGSVYHGRLGDYRQTGFPYAPVFSDRRVTASGGPLERFQARLKEVEATI---------RTRNQARRKPYEYLLPSRIPAST 683          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 61/216 (28.24%), Postives = 99/216 (45.83%), Query Frame = -1
Query:  133 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 780
            Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI      +++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R       P   +    L+      ++T P       V+ +L  L     D   LG   +  + E+     + E FR  L ++            +R RN    +PY  L P
Sbjct:  496 YYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLERESSGFPTCLRTVPELIEYVTMVMYTCSARHAAVNTGQLEYTSWMPNFPSSMR-----NPPMQSKGLTTLQ----TFMDTLPDVKTTCIVLLVLWTLCREPDDRRPLGHFPDIHFVEE-APRRSMEAFRQNLNQI---------SHNIRQRNKCLNLPYYYLDP 692          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 4.162e-15
Identity = 65/221 (29.41%), Postives = 90/221 (40.72%), Query Frame = -1
Query:  133 LTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 795
            L I    +A D L LW+   ++V   V+ +Y    +V  D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  + G+ PN P T R    T            +     ++ + P   +A   M I   L    PD   LG   E  +  DP   A   +F+  L  LE  I ARN    L         PYE LKP
Sbjct:  453 LRIPSALYARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVGLCHAQDRGFPVSFQSRAQLCHFLTMCVFTCTAQHAAINQGQLDWYGWVPNAPCTMRMPPPTSKD---------DVTMETVMGSLPDVQKACLQMTITWHLGRLQPDMVPLGHHTE-KYFSDPRTKAVLSQFQADLDNLEKEITARNEQLDL---------PYEYLKP 654          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.436e-15
Identity = 61/216 (28.24%), Postives = 98/216 (45.37%), Query Frame = -1
Query:  133 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 780
            Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI       ++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R       P   +    L+      ++T P       V+ +L  L     D   LG   +  + E+     + E FR  L ++            +R RN    +PY  L P
Sbjct:  496 YYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLGRESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNSGQLEYTSWMPNFPSSMR-----NPPMQTKGLTTLQ----TYMDTLPDVKTTCIVLLVLWTLCREPDDRRPLGHFPDIHFVEEGP-RRSIEAFRQNLNQI---------SHNIRQRNKCLTLPYYYLDP 692          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.436e-15
Identity = 59/216 (27.31%), Postives = 98/216 (45.37%), Query Frame = -1
Query:  133 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 780
            Y + +D L +W+A++++VT+ + +YYP  + VE D ELQ+W  EI       ++   +   L+T  +LI  +T +++  S  HAAVN GQ  +  + PN P + R       P   +    LE      ++T P        + +L  LS    D   LG   +  + E+     + E FR +L ++            +R RN    +PY  L P
Sbjct:  496 YYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTVPELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMR-----NPPIQTKGLTTLE----TFMDTLPDVKTTCITLLVLWTLSREPDDRRPLGHFPDIHFVEE-APRRSIEAFRQRLNQI---------SHDIRQRNKCLPIPYYYLDP 692          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 5.436e-15
Identity = 64/214 (29.91%), Postives = 94/214 (43.93%), Query Frame = -1
Query:  133 FANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 774
            +A+D L LW+ I ++V   V+ +Y    +V+ D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  +  + PN P    C +    P+ ++     +     ++ + P   QA   MAI   LS   PD   LG   E  +   P   A   +FR  L +LE  I ARN              PYE LKP
Sbjct:  460 YAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAP----CTMRMPPPTTKE-----DVTMATVMGSLPDVRQACLQMAISWHLSRRQPDMVPLGHHKE-KYFSGPKPKAVLNQFRTDLEKLEKEITARNEQLDW---------PYEYLKP 654          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 58/216 (26.85%), Postives = 100/216 (46.30%), Query Frame = -1
Query:  133 YPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 780
            Y + +DG+ +W AI+ +V++ V+ YYP  + V  D+ELQAW  EI + G   ++      +L T + L++ +T +++  S  HAAV+  Q+    + PN P + +    T              PE   + T P+      V+  L +LS    D   LG   +  + E+ V   +   F+ KL+++            +R RN +  +PY  L P
Sbjct:  472 YYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLPPSMQLPPPTSKGQ--------ASPE-GFIATLPAVNATCDVIIALWLLSKEPGDRRPLGHYPDEHFTEE-VPRRSIAAFQRKLIQISS---------GIRKRNQSLALPYTYLDP 668          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.010e-14
Identity = 61/214 (28.50%), Postives = 94/214 (43.93%), Query Frame = -1
Query:  133 FANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 774
            +A D L LW+ + ++V   V+ +Y     V  D ELQAW  +I  +G    +   +   L++   L   +T  ++  +G H++ + GQ  +  + PN P T R       P        LEK    ++ T P+  QA+  M+I   L    P    LG+  E  +   P   A  +KFR +L  LE  I+ RNA             PYE L+P
Sbjct:  461 YAQDALRLWEILSRYVEGIVSLHYKTDESVRDDIELQAWCRDITEIGLLGAQDRGFPVTLQSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAPCTMRL------PPPTTKDVTLEK----VMATLPNFHQASLQMSITWQLGRRQPIMVALGQH-EEEYFSGPEPKAVLKKFREELAALEKDIEIRNAQLDW---------PYEYLRP 654          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 68/226 (30.09%), Postives = 105/226 (46.46%), Query Frame = -1
Query:  133 LTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAW---WTEIRTVGHGDKKHEPWWPV-LKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARC-NIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 795
            L +E   +A D L LW+ I ++V   V+ +Y     V+ D ELQAW   +TEI  +G  D+     +PV L++ + L   +T  ++  +G H++ + GQ  +  + PN P T R     T+D + E            ++ T P+  QA+  M+I   L    P    LG+  E  +   P   A   KFR +L  L+  I+ RNA   L         PYE L+P
Sbjct:  454 LGVESSFYAQDALRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDR----GFPVSLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPNAPCTMRLPPPTTKDATLE-----------TVMATLPNFHQASLQMSITWQLGRCQPTMVALGQH-EEEYFSGPGPKAVLTKFREELAALDKDIEVRNAKLAL---------PYEYLRP 654          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.339e-13
Identity = 62/215 (28.84%), Postives = 99/215 (46.05%), Query Frame = -1
Query:  133 FANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARC-NIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 774
            +A D L LW+ I ++V   V+ +Y     V+ D ELQ W  EI  +G    +   +   L++   +   +T  ++  +G HA+V+ GQ  +  + PN P T R     T+D + E            ++ T P+  QA+  M+I   L    P    +G+  E  +   P   A  +KFR +L  L+  I+ RNA  KL        +PYE L+P
Sbjct:  460 YAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQSRDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMRLPPPTTKDATLE-----------TVMATLPNFHQASLQMSITWQLGRRQPVMVAVGQH-EEEYFSGPEPKAVLKKFREELAALDKEIEIRNA--KLD-------MPYEYLRP 653          
The following BLAST results are available for this feature:
BLAST of CX043978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX_PSEAE4.917e-1630.60Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LX12B_RAT1.095e-1528.24Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LOX12_MOUSE4.162e-1529.41Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LX12B_MOUSE5.436e-1528.24Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX12B_HUMAN5.436e-1527.31Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LOX12_HUMAN5.436e-1529.91Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LX15B_RAT1.582e-1426.85Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOX12_BOVIN6.010e-1428.50Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]
LOX12_PIG1.025e-1330.09Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LOX15_PONAB1.339e-1328.84Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14F05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14F05-L10-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043978 ID=CX043978; Name=CX043978; organism=Citrus sinensis; type=EST; length=801bp
ATTTGATTCATTCTTGAACTCATTCTCAAAAGTTTTTATTGATACAACAT
TCGAGCGATTGCAACAACATTTTCAACTCTAGATAGAGATGCTGTACGGA
ACTCCTTTTCCTGTAACACCAGGTTCCGAAAATGGCTTCAAGAGCTCATA
TGGCACCATCCCAGCTCCATTTCTATTCCTCAACTTGGGATCTGCATTCC
TTGCATCAATAATCCCTTCAAGCTCCATTAACTTGCCTCTAAACTTTTCA
AATGCTGCATTTATAACCGGATCCTCACGCCATGCTGGCTCTATTTCTTT
TCCTAAATACTCCTCATCAGGAGAATGAGTCGATAAAACATCAAGAATAG
CCATAACTTTAGTAGCTTGAATCTGGGAAGGGAAGGTATTCAAAAGTGCA
TTTTCAGGTTTTTCAAGGAAGAATTTCCATTGTTCATCAGATGGATCTTC
AGTGGCAATGTTGCATCTTGCAGTGGTTGGCCTATTGGGGAAATAGCCTC
CGTAAGTGTATTGGCCGAAGTTAACAGCTGCGTGGTGACCAGATGTTACC
CAAACAATAGTTGTGATGATTTCAATTAAATCCTTAGGGGTTTTCAAGAC
AGGCCACCAAGGTTCATGTTTCTTGTCACCGTGTCCCACAGTTCGAATTT
CAGTCCACCAAGCTTGGAGCTCTTCATCAGATTCTACAAGGCTTTTATCA
GGGTAGTAGTGATTAACATAATCGGTAACCCATTGTTTTATGGCATCCCA
GAGATCAAGGCCATCATTGGCAAAAGGATAGTCTTCAATTGTTAGCTTCA
A
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