DN134784

Overview
NameDN134784
Unique NameDN134784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12825 contig Csv1_Contig12825:286..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134784 vs. ExPASy Swiss-Prot
Match: 1A1L1_MOUSE (1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Mus musculus GN=Accs PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 53/170 (31.18%), Postives = 86/170 (50.59%), Query Frame = 3
Query:    6 PGRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-QEYLETNKRRIKKLYDSFVAGLK*LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 512
            P R H+++  SKD  + G R GV+Y+ N+ V  A   L R+  +S   Q  +  +L D  +I Q YL  N  R+K  +      L+ LGI      AG + W D+   +   + + E  LW + L+  K+ ++ G    C EPGWFR  F+   +  + L ++R+++V E
Sbjct:  313 PQRTHVMWATSKDFGMSGLRFGVLYTENQHVATAVASLCRYHGLSGLVQHQMAQLLRDHDWISQVYLPENHARLKAAHTYVSEELRALGIPFVSRGAGFFIWVDLRKYLCKGTFEEEALLWRQFLD-NKVLLSSGKTFECKEPGWFRVVFSDKENR-LRLGMQRMRQVLE 480          
BLAST of DN134784 vs. ExPASy Swiss-Prot
Match: 1A1L2_MOUSE (1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Mus musculus GN=Accsl PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 3
Query:    6 PGRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVAGLK*LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIER 494
            P   H+I+G SKD  + G R GV+Y++N+ V +A K       +S  TQ  L  +L D ++I + YL  N  R++K Y      LK L I      +GL+ W ++   +   +   E  L  +  +  K+ ++ G +  CIEPGWFR  F   TH  + + ++R
Sbjct:  406 PNMTHMIWGTSKDFGMSGIRFGVLYTHNKEVASAMKAFGYHHGVSGITQYKLCRLLQDKEWISKVYLPKNHSRLQKAYSYITKILKDLKIPFYNGGSGLFVWINLKAYLSPCTFDQEQILHQRFRD-KKLLLSSGKSYMCIEPGWFRLVFAE-THLHLQVAMDR 567          
The following BLAST results are available for this feature:
BLAST of DN134784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
1A1L1_MOUSE4.851e-1731.181-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A1L2_MOUSE1.844e-1631.711-aminocyclopropane-1-carboxylate synthase-like pr... [more]

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Properties
Property NameValue
Genbank descriptionwca01c03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01c03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134784 ID=DN134784; Name=DN134784; organism=Citrus sinensis; type=EST; length=626bp
TACGGCCGGGTAGAGTTCATATAATATACGGGTTGTCGAAAGACCTCTCT
CTTCCGGGATTTAGGACCGGGGTTATCTATTCCTATAATGAGAGTGTTTT
GGCCGCTGCCAAAAAATTAACAAGATTTTGTTCTATTTCAGCCCCCACTC
AGAGGCTCCTAATTTCCATGCTCTCAGATACAAAGTTCATCCAGGAATAT
TTAGAGACCAATAAAAGGAGGATAAAGAAACTGTATGATTCATTTGTGGC
AGGTTTGAAATAATTAGGAATCAGGTGCTCAGAGAGCAGTGCTGGCTTAT
ATTGCTGGGCTGATATGAGTGGACTAATCCCCTCTTACAGTGAGAAAGGG
GAACTTGAATTATGGGATAAGCTCTTGAACATTGCTAAGATCAATGTTAC
TCCTGGCTCGGCCTGCCACTGTATAGAACCGGGATGGTTCCGGTGTTGTT
TTACTTCTTTAACCCACGAGGATATCCCTTTAGTCATTGAAAGGATCCAA
AAAGTTGCTGAAACTTGTAAATAAATGCTGAGAGGAATTTCATATGTAAG
ATTATTGCCATCATTAATGTTTTGGGAAAATTATGGGGACATGCACTGCT
TCTTAATTGAACAAAGGTCTAGTTCA
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