CX043963

Overview
NameCX043963
Unique NameCX043963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VR+V+M G  WG+SKLVPVGYGIKKLQI   + DD V  D L EE    E   +Y+QS DI AFNKI
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEEITKFE---DYVQSVDIAAFNKI 265
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLLDVKPWDDETDMK++E  VR++EM G  WGASKLVPVGYGI KLQIM  I DD V +D L E+    E   +++QS DI AFNKI
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFEDFVQSVDIAAFNKI 222
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDMK++E  VR++EM G  WGASKLVPVGYGI KLQIM  I DD V VD L E+    +   +++QS DI AFNKI
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 222
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 9.984e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VRS++  G  WG+SKLVPVGYGIKKLQI   + DD V  D ++EE + A   +EY+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FDEYVQSMDVAAFNKI 225
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VRS++M G  WGASKLVPVGYGIKKLQI   + DD V  D ++EE + A    +++QS D+ AFNKI
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEENITA--FEDFVQSMDVAAFNKI 228
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VRS++  G  WG+SKLVPVGYGIKKLQI   + DD V  D ++EE + A    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VRS++  G  WG+SKLVPVGYGIKKLQI   + DD V  D ++EE + A    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VRS++  G  WG+SKLVPVGYGIKKLQI   + DD V  D ++EE + A    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE VRS++  G  WG+SKLVPVGYGIKKLQI   + DD V  D ++EE + A    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 4.955e-23
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM KLEE +RS++M G  WG+SKLVPVGYGIKKLQI   + DD V  D ++EE + A    +++QS D+ AFNKI
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEEKITA--FEDFVQSMDVAAFNKI 227
The following BLAST results are available for this feature:
BLAST of CX043963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1D_XENLA4.482e-2465.52Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_DROME4.482e-2464.37Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B2_BOMMO4.482e-2463.22Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_BOVIN9.984e-2463.22Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_XENTR1.304e-2363.22Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_MOUSE2.905e-2362.07Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN2.905e-2362.07Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK2.905e-2362.07Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT3.794e-2362.07Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]
EF1B_XENLA4.955e-2360.92Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E08-J16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043963 ID=CX043963; Name=CX043963; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTTTCAAGGAAATTTGAAAGATCATCTCGTCATTTCT
TCTCAATTTAGCAACGGAAAATGCAGGCCAAGCAAAACCATTAAAAAGCA
AAACACAATTAAAACGACAAAAACTAAATTGCAGCCAAAAATGGCTGCAC
TATAAGGCAAAACAATGAGAGGATTCTTAAATTTTATTGAAGGCGACAAT
GTCGCAGCTCTGAATATACTCATTGCAGGGCTCAGCTGGGAGGGGTTCCT
CTATCAGTGAATCCACAAAAACAAGATCGTCAACGATTGTAATCATGATT
TGCAGCTTCTTAATCCCATAACCGACTGGGACCAATTTTGATGCTCCCCA
AAAGAAACCCGGCATCTCAACACTCCTAACTGCCTCTTCTAGCTTTTTCA
TGTCTGTCTCGTCATCCCAAGGCTTTACATCCAAAAGTACCGATGATTTT
CCACTCTCTTTCTTCTTGGATGATTGCTTTTTAGCAGCCTCCCTCTCCTC
TGCTGCTTTCTTATCCTCCTCAGTCTCATCTCCAAAGAAATCCAAATCAT
CATCATCACCACCTCCAGCAGCAGCAGGCTTGGCTGCGGCGGCGTCAACT
GGAGCACCTTTGCCATCAACTCTCACACCAACGGCTTTGCCAGGGAAACT
TGGG
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