CX043963

Overview
NameCX043963
Unique NameCX043963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM +LE+ VRS+EM G  WGASKLV VGYGIKKL I + + D  V  D L E+    +   +Y+QS D+ AFNKI
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQSVDVAAFNKI 216          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            V LDVKPWDDET M +LE+AVRS++M G  WG SKLVPVG+G+ K QI + + DD V +++L EE    E   +Y+QS DI A +K+
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE---LEGFEDYVQSTDIAAMSKL 214          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.545e-19
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            ++LDVKPWDDETD+K +E  +R +   G  WGASK VPV +GI+KL I   + DD V +D L EE    E   +++QS DI AFNKI
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQSVDIAAFNKI 256          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLP-AEPCNEYIQSCDIVAFNKI 440
            +LLDVKPWDDETDM +LE  VRSV++ G  WG+SKLVPVGYGI+KLQI          V+     PL  +    E++QS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCV-------VECRWGRPLERSHQVEEHVQSVDIAAFNKI 277          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            V LDVKPWDDETD+ +L   V+++EM G  WGA + +PVG+GIKKLQI + + D LV +D L       E   +++QS DI A  K+
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL---QAAVEEDEDHVQSTDIAAMQKL 213          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            V LDVKPWDDET+++++   V+++EM G  WGA + +P+G+GIKKLQI   + DD V +D L +     E   +++QS DI A  K+
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDEDHVQSTDIAAMQKL 206          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            +L DVKPWDD  D++ L   + +V+  G  WG  KLVPV +G+KKLQ +I I DD V  D L E  +  E   + +QS DIVA+NKI
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEELIMSFE---DEVQSMDIVAWNKI 222          
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_PIG (Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = -2
Query:  180 VKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 428
            VKPWDDE  M KLEE V S++  G       LVPVGYGIK         DD V  D ++EE + A    +Y+QS D+ AFNKI
Sbjct:  145 VKPWDDEXXMAKLEEXVXSIQADGLVXXXXXLVPVGYGIKXXXXXXXXXDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 224          
The following BLAST results are available for this feature:
BLAST of CX043963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_DICDI7.911e-2158.62Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1B_SCHPO1.142e-1954.02Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1D_DROME2.545e-1951.72Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP2.154e-1855.68Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL4.492e-1648.28Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST1.001e-1544.83Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR4.967e-1548.2825 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]
EF1B_PIG3.935e-1248.19Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E08-J16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043963 ID=CX043963; Name=CX043963; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTTTCAAGGAAATTTGAAAGATCATCTCGTCATTTCT
TCTCAATTTAGCAACGGAAAATGCAGGCCAAGCAAAACCATTAAAAAGCA
AAACACAATTAAAACGACAAAAACTAAATTGCAGCCAAAAATGGCTGCAC
TATAAGGCAAAACAATGAGAGGATTCTTAAATTTTATTGAAGGCGACAAT
GTCGCAGCTCTGAATATACTCATTGCAGGGCTCAGCTGGGAGGGGTTCCT
CTATCAGTGAATCCACAAAAACAAGATCGTCAACGATTGTAATCATGATT
TGCAGCTTCTTAATCCCATAACCGACTGGGACCAATTTTGATGCTCCCCA
AAAGAAACCCGGCATCTCAACACTCCTAACTGCCTCTTCTAGCTTTTTCA
TGTCTGTCTCGTCATCCCAAGGCTTTACATCCAAAAGTACCGATGATTTT
CCACTCTCTTTCTTCTTGGATGATTGCTTTTTAGCAGCCTCCCTCTCCTC
TGCTGCTTTCTTATCCTCCTCAGTCTCATCTCCAAAGAAATCCAAATCAT
CATCATCACCACCTCCAGCAGCAGCAGGCTTGGCTGCGGCGGCGTCAACT
GGAGCACCTTTGCCATCAACTCTCACACCAACGGCTTTGCCAGGGAAACT
TGGG
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