CX043962

Overview
NameCX043962
Unique NameCX043962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            +LLDVKPWDDETDM +LE+ VRS+EM GL WGASKLV VGYGIKKL I + + D  VS D L E+    +   +Y+QS D+ AFNKI
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQSVDVAAFNKI 216          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            V LDVKPWDDET M +LE+AVRS++M GL WG SKLVPVG+G+ K QI + + DD VS+++L EE    E   +Y+QS DI A +K+
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE---LEGFEDYVQSTDIAAMSKL 214          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            ++LDVKPWDDETD+K +E  +R +   GL WGASK VPV +GI+KL I   + DD VS+D L EE    E   +++QS DI AFNKI
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQSVDIAAFNKI 256          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+KLQI   +  +      L   H       E++QS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV--ECRWGRPLERSH----QVEEHVQSVDIAAFNKI 277          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.624e-17
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            V LDVKPWDDETD+ +L   V+++EM GL WGA + +PVG+GIKKLQI + + D LVS+D L       E   +++QS DI A  K+
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL---QAAVEEDEDHVQSTDIAAMQKL 213          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            V LDVKPWDDET+++++   V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L +   + E   +++QS DI A  K+
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQ---SIEEDEDHVQSTDIAAMQKL 206          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            +L DVKPWDD  D++ L   + +V+  GL WG  KLVPV +G+KKLQ +I I DD V  D L E  ++ E   + +QS DIVA+NKI
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEELIMSFE---DEVQSMDIVAWNKI 222          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_PIG (Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  477 VKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VKPWDDE  M KLEE V S++  GL      LVPVGYGIK         DD V  D ++EE +TA    +Y+QS D+ AFNKI
Sbjct:  145 VKPWDDEXXMAKLEEXVXSIQADGLVXXXXXLVPVGYGIKXXXXXXXXXDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 224          
The following BLAST results are available for this feature:
BLAST of CX043962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_DICDI7.883e-2260.92Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1B_SCHPO1.138e-2056.32Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1D_DROME2.536e-2054.02Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP5.288e-1856.32Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL2.624e-1750.57Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST7.635e-1747.13Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR2.456e-1549.4325 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]
EF1B_PIG1.348e-1350.60Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E08-J16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043962 ID=CX043962; Name=CX043962; organism=Citrus sinensis; type=EST; length=808bp
GCCCCCCCTCGTGCCGCGTCTCTTCTTGCCTCTGCCTTGATTTGAAGACC
AAAATGGCCATCACTTTTTCGGATCTCCACACAGAGTCAGGCCTTAAGTC
TCTCGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGA
CAAAAGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGAT
TCTTTCCCCAACGCCAGCAGCTGGTACGACAGCGTTTCTTCACGTCTCGC
CCCAAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTG
CTCCAGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGAT
GATGATGATTTGGATCTCTTTGGAGATGAGACTGAGGAGGATAAGAAAGC
AGCAGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGA
GTGGAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACA
GACATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCT
CTTTTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGC
TGCAAATCATGATTACAATCGTTGACGATCTTGTTTCTGTGGATTCACTG
ATAGAGGAACACCTCACAGCTGAGCCCTGCAATGAGTATATTCAGAGCTG
CGACATCGTCGCCTTCAATAAAATTTAAGAATCCTCTCATTGTTTTGCCT
TATAGTGCAGCCATTTTTGGCTGCAATTTAGTTTTTGTCGTTTTAATTGT
GTTCTGCT
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