DN134776

Overview
NameDN134776
Unique NameDN134776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  139 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 375
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  130 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 402
            +++VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   90 EKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  124 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 387
            ++ + V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA  K  + + I +H+
Sbjct:   18 DSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  124 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 399
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  139 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 387
            V+VDF A WCGPCR +AP + E++++    V  +K++ DE  + A+ + + ++PT M  K G+ VD VVGA  K  L  T+ K+L
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  139 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 390
            V+VDF A WCGPCR ++P +  +A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 31/92 (33.70%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  124 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 399
            + K L+VV F A W   C  +   +AELAK+LP V F+K++ + +  V+  + + ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   29 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 120          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  100 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 387
            NE+L K  +  Q VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D++ +      + ++PTF F   G  V +  GA +  L+ T+  ++
Sbjct:   10 NEELDKYLQ-HQRVVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   85 TVEAWNEQLQKSN-ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 348
            TV+  N   Q    ++ + VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  124 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 399
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ +
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
The following BLAST results are available for this feature:
BLAST of DN134776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRXF_SPIOL1.644e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_BRANA1.644e-1135.87Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_CHLLT1.644e-1135.56Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
GLRX3_RAT1.644e-1134.78Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
THIO_SYNY32.147e-1141.18Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORPU2.147e-1134.88Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
GLRX3_HUMAN2.147e-1133.70Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
THIO3_DICDI2.804e-1136.46Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO1_CORNE3.662e-1138.89Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
GLRX3_MOUSE3.662e-1133.70Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionwca01b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134776 ID=DN134776; Name=DN134776; organism=Citrus sinensis; type=EST; length=599bp
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGNNNGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATNNNGGTGCCACACCGTTGAGGCCTGGA
ACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCCATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTTGAA
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